HHsearch alignment for GI: 254780707 and conserved domain: PRK09906

>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=98.21  E-value=0.00031  Score=42.29  Aligned_cols=201  Identities=12%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
T Consensus        88 ~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~----------  152 (296)
T PRK09906         88 EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIE-LVSLINTQQEEKLRRGE----LDVGFMRHPVYSD----------  152 (296)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC----------
T ss_conf             77138832122569999999999987408986348-99758089999998699----7679873688998----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
T Consensus       153 -~l~~~~l~~~~~~~~~~~~hpla~~----------------------~~i~~~dl----~~~~~i~~~~~~~~~~~~~~  205 (296)
T PRK09906        153 -EIDYLELLDEPLVVVLPVDHPLAHE----------------------KEITAAQL----DGVNFISPDPAQSGSLAPII  205 (296)
T ss_pred             -CEEEEEEECCEEEEEEECCCCCCCC----------------------CCCCHHHH----CCCCEEEECCCCCCCHHHHH
T ss_conf             -8189985046079998289810059----------------------99899997----59987963665476099999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL  262 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~  262 (346)
T Consensus       206 ~~~~~~~g~~p-----------------------------~~~~~~~~~~~~~~~v~~-G~Gi~~lP~~~~~~~~~~l~~  255 (296)
T PRK09906        206 KAWFAQHNSQP-----------------------------NIVQVATNILVTMNLVGM-GLGCTIIPGYMNNFNTGQVVF  255 (296)
T ss_pred             HHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCEEEECHHHHHHHCCCCEEE
T ss_conf             99999779997-----------------------------469998989999999994-989998458773106899999


Q ss_pred             CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             344576789556027987503678999707885668899999999749
Q gi|254780707|r  263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
T Consensus       256 ~pl-----------~~-~~~~~~~~l~~r~~--~~spa~~~Fi~~l~e  289 (296)
T PRK09906        256 RPL-----------AG-NVPSIALLMAWKKG--EMKPALRDFIAIVQE  289 (296)
T ss_pred             EEC-----------CC-CCCEEEEEEEECCC--CCCHHHHHHHHHHHH
T ss_conf             988-----------99-98702899998799--999999999999999