HHsearch alignment for GI: 254780707 and conserved domain: PRK09906
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=98.21 E-value=0.00031 Score=42.29 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=110.2
Q ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r 24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346)
Q Consensus 24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346)
T Consensus 88 ~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~---------- 152 (296)
T PRK09906 88 EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIE-LVSLINTQQEEKLRRGE----LDVGFMRHPVYSD---------- 152 (296)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHHHHHHHCCC----CCEEEEECCCCCC----------
T ss_conf 77138832122569999999999987408986348-99758089999998699----7679873688998----------
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346)
Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346)
T Consensus 153 -~l~~~~l~~~~~~~~~~~~hpla~~----------------------~~i~~~dl----~~~~~i~~~~~~~~~~~~~~ 205 (296)
T PRK09906 153 -EIDYLELLDEPLVVVLPVDHPLAHE----------------------KEITAAQL----DGVNFISPDPAQSGSLAPII 205 (296)
T ss_pred -CEEEEEEECCEEEEEEECCCCCCCC----------------------CCCCHHHH----CCCCEEEECCCCCCCHHHHH
T ss_conf -8189985046079998289810059----------------------99899997----59987963665476099999
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL 262 (346)
Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~ 262 (346)
T Consensus 206 ~~~~~~~g~~p-----------------------------~~~~~~~~~~~~~~~v~~-G~Gi~~lP~~~~~~~~~~l~~ 255 (296)
T PRK09906 206 KAWFAQHNSQP-----------------------------NIVQVATNILVTMNLVGM-GLGCTIIPGYMNNFNTGQVVF 255 (296)
T ss_pred HHHHHHCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCEEEECHHHHHHHCCCCEEE
T ss_conf 99999779997-----------------------------469998989999999994-989998458773106899999
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 344576789556027987503678999707885668899999999749
Q gi|254780707|r 263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346)
Q Consensus 263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346)
T Consensus 256 ~pl-----------~~-~~~~~~~~l~~r~~--~~spa~~~Fi~~l~e 289 (296)
T PRK09906 256 RPL-----------AG-NVPSIALLMAWKKG--EMKPALRDFIAIVQE 289 (296)
T ss_pred EEC-----------CC-CCCEEEEEEEECCC--CCCHHHHHHHHHHHH
T ss_conf 988-----------99-98702899998799--999999999999999