HHsearch alignment for GI: 254780707 and conserved domain: PRK09986
>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=97.74 E-value=0.0025 Score=37.27 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=106.9
Q ss_pred CCCCEEEEEEC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 13767999803-42589999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 23 FARNRIRIAGS-STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 23 ~a~~~I~i~GS-st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 78 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~~~----~D~a~~~~~~~~~--------- 143 (278)
T PRK09986 78 GEAGRIELGVVGTALWGRMRPAMRHFLKENPNVEVL-FREKSPSMQMALLERRE----LDAGIWRMALEPN--------- 143 (278)
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCC---------
T ss_conf 777733687421688876428999999878983999-99788699999997799----7589963777788---------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 144 -~~~~~~~l~~~~~~~~~~~~hpla~~~----------------------~i~~~~l----~~~~~i~~--~~~~~~~~~ 194 (278)
T PRK09986 144 -PGFTSLRLHESAFAVAVPEEHLLASKS----------------------SVPLKAL----RNEYFVTL--PSVHSDWGF 194 (278)
T ss_pred -CCCEEEEEEECCCEEEECCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH
T ss_conf -774268877416379965987333699----------------------9999998----59997986--799866999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346)
T Consensus 195 ~~~~~~~~g~~-----------------------------~~~~~~~~~~~~~~~~V~~G-~Giailp~~~~~~~~~~v~ 244 (278)
T PRK09986 195 LQRVCQQAGFS-----------------------------PQIIREVNEPQTVLAMVSMG-IGITLVADSYAQMPWPGVV 244 (278)
T ss_pred HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHHHC-CEEEEEHHHHHCCCCCCEE
T ss_conf 99999977998-----------------------------51799999899999999979-9899841777423789999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 134457678955602798750367899970788566889999999974
Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346)
Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346)
T Consensus 245 ~~Pl~-----------~--~~~~~~~lv~~~~~--~~p~~~~fi~~l~ 277 (278)
T PRK09986 245 FRPLK-----------E--RIPADLYIVYHQQQ--ATPALEKLLAALT 277 (278)
T ss_pred EEECC-----------C--CCCEEEEEEECCCC--CCHHHHHHHHHHC
T ss_conf 99889-----------9--98038999984999--9999999999865