HHsearch alignment for GI: 254780707 and conserved domain: PRK09986

>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=97.74  E-value=0.0025  Score=37.27  Aligned_cols=199  Identities=12%  Similarity=0.102  Sum_probs=106.9

Q ss_pred             CCCCEEEEEEC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             13767999803-42589999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGS-STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GS-st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
T Consensus        78 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~-i~~~~~~~~~~~l~~~~----~D~a~~~~~~~~~---------  143 (278)
T PRK09986         78 GEAGRIELGVVGTALWGRMRPAMRHFLKENPNVEVL-FREKSPSMQMALLERRE----LDAGIWRMALEPN---------  143 (278)
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCC---------
T ss_conf             777733687421688876428999999878983999-99788699999997799----7589963777788---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
T Consensus       144 -~~~~~~~l~~~~~~~~~~~~hpla~~~----------------------~i~~~~l----~~~~~i~~--~~~~~~~~~  194 (278)
T PRK09986        144 -PGFTSLRLHESAFAVAVPEEHLLASKS----------------------SVPLKAL----RNEYFVTL--PSVHSDWGF  194 (278)
T ss_pred             -CCCEEEEEEECCCEEEECCCCCCCCCC----------------------CCCHHHH----CCCCEEEE--CCCCCHHHH
T ss_conf             -774268877416379965987333699----------------------9999998----59997986--799866999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK  261 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~  261 (346)
T Consensus       195 ~~~~~~~~g~~-----------------------------~~~~~~~~~~~~~~~~V~~G-~Giailp~~~~~~~~~~v~  244 (278)
T PRK09986        195 LQRVCQQAGFS-----------------------------PQIIREVNEPQTVLAMVSMG-IGITLVADSYAQMPWPGVV  244 (278)
T ss_pred             HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHHHC-CEEEEEHHHHHCCCCCCEE
T ss_conf             99999977998-----------------------------51799999899999999979-9899841777423789999


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             134457678955602798750367899970788566889999999974
Q gi|254780707|r  262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV  309 (346)
Q Consensus       262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l  309 (346)
T Consensus       245 ~~Pl~-----------~--~~~~~~~lv~~~~~--~~p~~~~fi~~l~  277 (278)
T PRK09986        245 FRPLK-----------E--RIPADLYIVYHQQQ--ATPALEKLLAALT  277 (278)
T ss_pred             EEECC-----------C--CCCEEEEEEECCCC--CCHHHHHHHHHHC
T ss_conf             99889-----------9--98038999984999--9999999999865