HHsearch alignment for GI: 254780707 and conserved domain: PRK10341
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=95.62 E-value=0.14 Score=27.58 Aligned_cols=196 Identities=11% Similarity=0.134 Sum_probs=101.0
Q ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECC--CCCCHHHHHHHHHCC
Q ss_conf 7679998034258-9999999999987798079998157620578988521013353012133--202476787676248
Q gi|254780707|r 25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSS--RKITQNELDECKKHG 101 (346)
Q Consensus 25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ss--r~l~~~E~~~~~~~~ 101 (346)
T Consensus 96 ~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-l~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~~--------- 161 (312)
T PRK10341 96 VVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVS-MYEAQLSSFLPAIRDGR----LDFAIGTLSNEMKLQ--------- 161 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CEEEEEECCCCCCCC---------
T ss_conf 3257435406889999999999999988897799-99899999999996698----619997436877778---------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 162 --~~~~~~l~~~~~~lv~~~~~p~~~------------------------~~~l~~L~----~~~--~il~~~~~~~~~~ 209 (312)
T PRK10341 162 --DLHVEPLFESEFVLVASKSRTCTG------------------------TTTLESLK----NEQ--WVLPQTNMGYYSE 209 (312)
T ss_pred --CEEEEEEECCCEEEEECCCCCCCC------------------------CCCHHHHC----CCC--EEEECCCCCHHHH
T ss_conf --749999512428999767542348------------------------97989980----798--6860699858999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHH-CCCCC
Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110-01110
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKN-NADVL 260 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~-~~~~~ 260 (346)
T Consensus 210 ~~~~~~~~g~~~-----------------------------~~~~~~~s~~~i~~lv~-~g~gi~~lP~~~~~~~~~~~L 259 (312)
T PRK10341 210 LLTTLQRNGISI-----------------------------ENIVKTDSVVTIYNLVL-NADFLTVIPCDMTSPFGSNQF 259 (312)
T ss_pred HHHHHHHCCCCC-----------------------------CCEEEECHHHHHHHHHH-HCCEEEEEHHHHHHHHCCCCE
T ss_conf 999999769998-----------------------------81699890999999999-799589726999966318989
Q ss_pred CCCCCCCCCCCHHHHCCCCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 0134457678955602798750-3678999707885668899999999749
Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPI-SRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346)
Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl-~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346)
T Consensus 260 ~~lpl-------------~~~~~~~~~~lv~~k-~~~ls~a~~~fie~~ke 296 (312)
T PRK10341 260 ITIPI-------------KETLPVARYAAVWSK-NYRIKKAASVLVELAKE 296 (312)
T ss_pred EEEEC-------------CCCCCEEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 99989-------------998851189999989-39889999999999998