HHsearch alignment for GI: 254780707 and conserved domain: PRK12684

>PRK12684 transcriptional regulator CysB-like protein; Reviewed.
Probab=97.90  E-value=0.00082  Score=39.97  Aligned_cols=202  Identities=11%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r   23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG  101 (346)
Q Consensus        23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~  101 (346)
T Consensus        90 ~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~---------  155 (313)
T PRK12684         90 QDQGNLTIATTHTQARYALPAAIAEFKKRYPKVRLS-ILQGSPTQIAEMVIHDQ----ADLAIATEAIADY---------  155 (313)
T ss_pred             CCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC---------
T ss_conf             777514110245557515949999998448980899-97178899999997799----6655043577777---------


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r  102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV  181 (346)
Q Consensus       102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~  181 (346)
T Consensus       156 -~~l~~~~l~~~~~~~v~~~~hpla~~----------------------~~v~l~dL----~~~p~--I~~~~~~~~r~~  206 (313)
T PRK12684        156 -KELVSLPCYQWNHAVVVPPDHPLLER----------------------KPLTLEDL----AQYPL--ITYDDAFAGRSK  206 (313)
T ss_pred             -CCEEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHH----CCCCE--EECCCCCCHHHH
T ss_conf             -87389980322168995389854469----------------------99999998----59998--962899858999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCC
Q ss_conf             998851345556541011111013660001344431024664021166236777631015321001332001100-1110
Q gi|254780707|r  182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVL  260 (346)
Q Consensus       182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~  260 (346)
T Consensus       207 i~~~~~~~g~~-----------------------------p~~~~e~~~~~~i~~~V~-~GlGi~ilP~~a~~~~~~~~L  256 (313)
T PRK12684        207 INKAFALRGLK-----------------------------PDIVLEAIDADVIKTYVE-LGLGVGIVADMAFDPERDRNL  256 (313)
T ss_pred             HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCCHHHHHHHHHCHHHCCCE
T ss_conf             99999977998-----------------------------747999997999999999-598572559998467638987


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             01344576789556027987503678999707885668899999999749
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
T Consensus       257 ~~lp------------~~~~~~~~~~~v~~~k-~~~ls~~~r~FIe~l~e  293 (313)
T PRK12684        257 RAIP------------AGHLFGSNVTRVALKQ-GAYLRGYVYTFIELFSP  293 (313)
T ss_pred             EEEE------------CCCCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf             9997------------8467766059999979-88668999999999874