HHsearch alignment for GI: 254780707 and conserved domain: PRK12684
>PRK12684 transcriptional regulator CysB-like protein; Reviewed.
Probab=97.90 E-value=0.00082 Score=39.97 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=114.2
Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 90 ~~~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~-l~~~~~~~~~~~l~~g~----~Dl~i~~~~~~~~--------- 155 (313)
T PRK12684 90 QDQGNLTIATTHTQARYALPAAIAEFKKRYPKVRLS-ILQGSPTQIAEMVIHDQ----ADLAIATEAIADY--------- 155 (313)
T ss_pred CCCCEEECCHHHHHHHHCCCHHHHHHHHHCCCEEEE-EEECCHHHHHHHHHCCC----CCEEECCCCCCCC---------
T ss_conf 777514110245557515949999998448980899-97178899999997799----6655043577777---------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 156 -~~l~~~~l~~~~~~~v~~~~hpla~~----------------------~~v~l~dL----~~~p~--I~~~~~~~~r~~ 206 (313)
T PRK12684 156 -KELVSLPCYQWNHAVVVPPDHPLLER----------------------KPLTLEDL----AQYPL--ITYDDAFAGRSK 206 (313)
T ss_pred -CCEEEEEEEECCEEEEECCCCCCCCC----------------------CCCCHHHH----CCCCE--EECCCCCCHHHH
T ss_conf -87389980322168995389854469----------------------99999998----59998--962899858999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHC-CCCC
Q ss_conf 998851345556541011111013660001344431024664021166236777631015321001332001100-1110
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN-ADVL 260 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~-~~~~ 260 (346)
T Consensus 207 i~~~~~~~g~~-----------------------------p~~~~e~~~~~~i~~~V~-~GlGi~ilP~~a~~~~~~~~L 256 (313)
T PRK12684 207 INKAFALRGLK-----------------------------PDIVLEAIDADVIKTYVE-LGLGVGIVADMAFDPERDRNL 256 (313)
T ss_pred HHHHHHHCCCC-----------------------------CCEEEEECCHHHHHHHHH-HCCCHHHHHHHHHCHHHCCCE
T ss_conf 99999977998-----------------------------747999997999999999-598572559998467638987
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 01344576789556027987503678999707885668899999999749
Q gi|254780707|r 261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346)
Q Consensus 261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346)
T Consensus 257 ~~lp------------~~~~~~~~~~~v~~~k-~~~ls~~~r~FIe~l~e 293 (313)
T PRK12684 257 RAIP------------AGHLFGSNVTRVALKQ-GAYLRGYVYTFIELFSP 293 (313)
T ss_pred EEEE------------CCCCCCCEEEEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 9997------------8467766059999979-88668999999999874