HHsearch alignment for GI: 254780707 and conserved domain: TIGR03227
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.13 E-value=8.1e-09 Score=67.82 Aligned_cols=276 Identities=10% Similarity=0.055 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH----HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 99999999998314201376799980342589----99999999998779807999815762057898852101335301
Q gi|254780707|r 7 VLMCFVVLEVYCGTGTFARNRIRIAGSSTLFP----YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDI 82 (346)
Q Consensus 7 ~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P----~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~di 82 (346)
T Consensus 17 ~~~~~~~~~~~~~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~t-GikV~-~v~~~sge~laRl~aEk~nPqaDV 94 (367)
T TIGR03227 17 LAAGAAALLQGAAAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAE-GIKVN-IVEAGGGEVVERAAKEKGNPKADV 94 (367)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCEEE-EEECCHHHHHHHHHHCCCCCCCEE
T ss_conf 9999999986423555458659999646643444346888768888866-98389-998977999999995227997209
Q ss_pred EECCCCCCHHHHHH--HHH------C------CCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 21332024767876--762------4------878724666521541255416665456888888876410255555323
Q gi|254780707|r 83 VNSSRKITQNELDE--CKK------H------GVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVV 148 (346)
Q Consensus 83 g~ssr~l~~~E~~~--~~~------~------~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~ 148 (346)
T Consensus 95 v~~~d~~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~------------------------ 150 (367)
T TIGR03227 95 IVTAPPFIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLL------------------------ 150 (367)
T ss_pred EEECCHHHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHH------------------------
T ss_conf 99785799999978895627896645577766377983898855579999985770------------------------
Q ss_pred CCCHHHHHHCCCCCCCCCCEEECCCC-CCCHHHHHH-HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEE
Q ss_conf 67302323100111224503544885-423578999-8851345556541011111013660001344431024664021
Q gi|254780707|r 149 FNPLKKWSEIRPDFPEVRIAIYVPSG-KHGTREVLE-KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIE 226 (346)
Q Consensus 149 ~g~i~~W~~~~~~lp~~~I~~~~r~~-~SGT~~~F~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (346)
T Consensus 151 k~~PkSW~DL~d--P~ykgkI~~~dP~tS~~g~~~l~~~~~~~G~e-D~a~~~~~~L-----~~------------N~~~ 210 (367)
T TIGR03227 151 KSAPASFADLLD--ADFKGKLAYSNPAQAADGMAVIILAFALFGSE-DAAFAYLAKL-----EA------------NNKF 210 (367)
T ss_pred CCCCCCHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHH-----HH------------CCCE
T ss_conf 579988998728--53378289528776617999999999970985-3889999988-----74------------4867
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE----EEECCCCCCCHHHH
Q ss_conf 16623677763101532100133200110011100134457678955602798750367899----97078856688999
Q gi|254780707|r 227 VDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLF----YVKRQHFNSVLGLR 302 (346)
Q Consensus 227 ~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~----yv~~~~~~~~~~~~ 302 (346)
T Consensus 211 ~~~s~~~~~~~~~~GE~~va~g~~~~~~~~~-~~~g~~v~~v~P~~~~----g~~~g~~~i~~~i~ivKg--a~n~e~Ak 283 (367)
T TIGR03227 211 HSAGTGKLNALLNKGEIAVANGDLQMDLADA-EHGGLNIKIFFPAADA----GEPPSAFAIPYAIGLVKG--APNQDAGK 283 (367)
T ss_pred ECCCCHHHHHHHHCCCEEEEEEECCHHHHHH-HHCCCCCEEEEECCCC----CCCCCEEEEEEHHHHHCC--CCCHHHHH
T ss_conf 2478179999985786789952020436777-6279970289546777----888734875220346449--99989999
Q ss_pred HHHHHHHCHHHCCCCCHHHHCCC-------CCCCHHHHHHHHH
Q ss_conf 99999749874052202775596-------3489999999999
Q gi|254780707|r 303 EYVSFSVSDEMMAPDSQLFQYGL-------IPISNEERKSVRD 338 (346)
Q Consensus 303 ~Fl~~~ls~~~~~~~~~~~~~Gy-------vPLp~~~~~~~~~ 338 (346)
T Consensus 284 kfidflLS~e~Q~---~~a~~~~~~Pv~~~v~l~~~~~~~~~~ 323 (367)
T TIGR03227 284 KLIDFLLSADAQA---KVPDLSFGIPGRSDVPLSDEHGEAAKA 323 (367)
T ss_pred HHHHHHCCHHHHH---HHHHHCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 9999972999999---999860167677887698355542213