HHsearch alignment for GI: 254780707 and conserved domain: TIGR03339
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=98.07 E-value=0.00047 Score=41.32 Aligned_cols=196 Identities=15% Similarity=0.198 Sum_probs=112.1
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 01376799980342589999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 22 TFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 22 ~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 83 ~~~~g~l~ig~~-~~~-~l~~~l~~f~~~~P~v~i~-i~~~~~~~~~~~L~~~~----~Di~i~~~~~~~~~-------- 147 (279)
T TIGR03339 83 ALREGSLRIAAT-APY-YVLDLVARFRQRYPGIEVS-VRIGNSQEVLQALQSYR----VDVAVSSEVVDDPR-------- 147 (279)
T ss_pred CCCCCEEEECCC-HHH-HHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHCCC----EEEEEECCCCCCCC--------
T ss_conf 787451686175-177-8999999999858986057-89558087775402596----58999727889998--------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 148 ---~~~~~l~~~~~~~~~~~~~~la~~~~----------------------i~~~~l~----~~~~--i~~~~~~~~~~~ 196 (279)
T TIGR03339 148 ---LDRVVLGNDPLVAVVHRQHPLAERES----------------------VTLEELA----GQPL--LMREPGSVTRQT 196 (279)
T ss_pred ---EEEEEEECCCEEEEEECCCHHHCCCC----------------------CCHHHHC----CCCE--EEECCCCCHHHH
T ss_conf ---39999404448999918863323999----------------------9999976----9998--982899839999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 99885134555654101111101366000134443102466402116623677763101532100133200110011100
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLK 261 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~ 261 (346)
T Consensus 197 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~-v~~G~GiailP~~~v~-~~~~l~ 245 (279)
T TIGR03339 197 TEEALAAAGVAP-----------------------------RPALEIGSREAIREA-VLAGLGVSVVSAAEVG-RDPRLR 245 (279)
T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHHHHHHH-HHHCCEEEEEEHHHHH-HCCCEE
T ss_conf 999999779987-----------------------------536778969999999-9979938971489961-098989
Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 1344576789556027987503678999707885668899999999
Q gi|254780707|r 262 LVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSF 307 (346)
Q Consensus 262 ~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~ 307 (346)
T Consensus 246 ~~pl~~~~------------~~~~~~l~~~~-~r~~sp~~~aFie~ 278 (279)
T TIGR03339 246 VLPIVGAE------------PTMDEYLYCLK-ERRGARLIAAFLEL 278 (279)
T ss_pred EEECCCCC------------CCCEEEEEEEC-CCCCCHHHHHHHHH
T ss_conf 99898889------------86279999989-98689999999965