HHsearch alignment for GI: 254780707 and conserved domain: pfam03466
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=98.03 E-value=0.00055 Score=40.94 Aligned_cols=200 Identities=14% Similarity=0.209 Sum_probs=114.0
Q ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 1376799980342589-999999999987798079998157620578988521013353012133202476787676248
Q gi|254780707|r 23 FARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHG 101 (346)
Q Consensus 23 ~a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~ 101 (346)
T Consensus 3 ~~~G~i~I~~~~~~~~~~lp~~l~~f~~~~P~i~i~-i~~~~~~~i~~~l~~g~----~Di~i~~~~~~~~--------- 68 (209)
T pfam03466 3 GPRGRLRIGAPPTFAAYLLPPLLARFRERYPDVELE-LREGDSEELLDLLAEGE----LDLAIRRGPPDDP--------- 68 (209)
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----CEEEEECCCCCCC---------
T ss_conf 987899999388999999999999999988892899-99898488999998698----1488731789999---------
Q ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
Q ss_conf 78724666521541255416665456888888876410255555323673023231001112245035448854235789
Q gi|254780707|r 102 VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREV 181 (346)
Q Consensus 102 ~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~ 181 (346)
T Consensus 69 --~~~~~~l~~~~~~~~~s~~~~l~~----------------------~~~i~~~~l----~~~~~i~~~--~~~~~~~~ 118 (209)
T pfam03466 69 --GLEARPLFEEPLVLVAPPDHPLAA----------------------GEPVSLEDL----ADEPLILLE--PGSGLRDL 118 (209)
T ss_pred --CEEEEEEEEEEEEEEECCCCHHHC----------------------CCCCCHHHH----CCCCEEEEC--CCCCCHHH
T ss_conf --808999762413655336705542----------------------897543551----466579856--99871379
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC--CC
Q ss_conf 9988513455565410111110136600013444310246640211662367776310153210013320011001--11
Q gi|254780707|r 182 LEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA--DV 259 (346)
Q Consensus 182 F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~--~~ 259 (346)
T Consensus 119 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~lv~~g~Gi~~lp~~~~~~~~~~~~ 168 (209)
T pfam03466 119 VDRALERAGLRP-----------------------------RVALEVNSLE-ALLAAVAAGLGIALLPRSAVARELADGR 168 (209)
T ss_pred HHHHHHHCCCCC-----------------------------CEEEEECCHH-HHHHHHHHCCEEEECCHHHHHHHHHCCC
T ss_conf 987787648763-----------------------------0246747879-9999999499999913999998875899
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 00134457678955602798750367899970788566889999999974
Q gi|254780707|r 260 LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346)
Q Consensus 260 ~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346)
T Consensus 169 L~~i~~------------~~~~~~~~~~li~~~~-~~~s~~~~~f~~~l~ 205 (209)
T pfam03466 169 LVVLPL------------PDPPLPRPIYLVYRKG-RRLSPAVRAFIDFLR 205 (209)
T ss_pred EEEEEC------------CCCCCCCEEEEEEECC-CCCCHHHHHHHHHHH
T ss_conf 899958------------8888744799999894-978999999999999