HHsearch results for GI: 254780707 and protein with PDBid: 1amf_A
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Probab=99.21 E-value=2.1e-09 Score=69.91 Aligned_cols=227 Identities=12% Similarity=0.143 Sum_probs=112.6
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 76799980342589999999999987798079998157620578988521013353012133202476787676248787
Q gi|254780707|r 25 RNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSD 104 (346)
Q Consensus 25 ~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~~ 104 (346)
..+|++-+++++.++++.++++|++++ +++| .+..+||+.+.+++.+|.. .|...+......... ..+.....
T Consensus 2 ~g~l~v~~a~s~~~~~~~l~~~Fek~~-gi~V-~~~~g~s~~l~~~l~~g~~---~~~~~~~~~~~~~~~--~~~~~~~~ 74 (233)
T 1amf_A 2 EGKITVFAAASLTNAMQDIATQFKKEK-GVDV-VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYA--VDKKAIDT 74 (233)
T ss_dssp -CEEEEEEEGGGHHHHHHHHHHHHHHH-CCEE-EEEEECHHHHHHHHHHTCC---CSEEECSSHHHHHHH--HHTTCBCG
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHH-CCEE-EEEECCHHHHHHHHHCCCC---CCEEEECCHHHHHHH--HHCCCCCC
T ss_conf 977999996263999999999998811-9779-9997775999999973999---868996645556777--75256566
Q ss_pred CEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHH
Q ss_conf 24666521541255416665456888888876410255555323673023231001112245035448854235789998
Q gi|254780707|r 105 IQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEK 184 (346)
Q Consensus 105 ~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~~ 184 (346)
............+.++..++... .....+..|.++.. +.. ..+...+.+++...+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~--~~i~~~~~~~~g~~~~~ 131 (233)
T 1amf_A 75 ATRQTLLGNSLVVVAPKASVQKD-------------------FTIDSKTNWTSLLN--GGR--LAVGDPEHVPAGIYAKE 131 (233)
T ss_dssp GGCEEEEEECEEEEEETTCCCCC-------------------CCCSTTCCHHHHHT--TCC--EEEECTTTCHHHHHHHH
T ss_pred CCEEEECCCCEEEECCCCCCCCC-------------------CCCCCHHHHHHCCC--CCC--EEEECCCCCHHHHHHHH
T ss_conf 64245204412553034211454-------------------45542556986246--993--89989987518999999
Q ss_pred HHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCC--CCCCCCCCHHHHCCCCCCC
Q ss_conf 85134555654101111101366000134443102466402116623677763101532--1001332001100111001
Q gi|254780707|r 185 KVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKD--VFGFVGLSFYKNNADVLKL 262 (346)
Q Consensus 185 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~--~igy~~~~~~~~~~~~~~~ 262 (346)
......... .... ..............+..... .+.|.+...... .
T Consensus 132 ~~~~~~~~~-----~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~--~---- 179 (233)
T 1amf_A 132 ALQKLGAWD-----TLSP---------------------KLAPAEDVRGALALVERNEAPLGIVYGSDAVASK--G---- 179 (233)
T ss_dssp HHHHTTCHH-----HHGG---------------------GEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHCS--S----
T ss_pred HHHHCCCHH-----HHCC---------------------CCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC--C----
T ss_conf 999727512-----3230---------------------1022555047788876246628744678898730--4----
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCC
Q ss_conf 344576789556027987503678999707885668899999999749874052202775596
Q gi|254780707|r 263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGL 325 (346)
Q Consensus 263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~Gy 325 (346)
.....+.|. ++.+++..+. .+++..+ .++.++|++|++|+++|. ++.+.||
T Consensus 180 ~~~~~~~p~-----~~~~~~~~~~-~i~k~~~---~~~A~~FidfllS~e~Q~---i~~~~Gf 230 (233)
T 1amf_A 180 VKVVATFPE-----DSHKKVEYPV-AVVEGHN---NATVKAFYDYLKGPQAAE---IFKRYGF 230 (233)
T ss_dssp EEEEEECCG-----GGSCCEEEEE-EEBTTCC---SHHHHHHHHHHTSHHHHH---HHHHTTC
T ss_pred CCCEEEECC-----CCCEEEEEEE-EEECCCC---CHHHHHHHHHHCCHHHHH---HHHHCCC
T ss_conf 575398579-----8863767889-9987999---999999999978999999---9998392