HHsearch results for GI: 254780707 and protein with PDBid: 1ixc_A
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=97.58 E-value=0.0027 Score=35.90 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=115.9
Q ss_pred CCCEEEEEECCH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 376799980342-5899999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r 24 ARNRIRIAGSST-LFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346)
Q Consensus 24 a~~~I~i~GSst-~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346)
...++++.-..+ ..-++..+...|.+.||++.+. +....+..-++.+.+|. +||+....+..+.
T Consensus 89 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~p~v~~~-i~~~~~~~~~~~l~~g~----~Di~i~~~~~~~~---------- 153 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVS-LTHMTKDEQVEGLLAGT----IHVGFSRFFPRHP---------- 153 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHHTS----CSEEEESCCCCCT----------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC-CEEECCHHCCCCCCCCC----EEEEEECCCCCCC----------
T ss_conf 65237873253079999999999975318764443-04520310032114796----4688851677787----------
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346)
Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346)
.+...++..+.++++++.+.+.... +..++.|+ -+.+...+.....++....+
T Consensus 154 -~l~~~~l~~~~~~~~~~~~h~~~~~----------------------~~i~~~dl----~~~~~i~~~~~~~~~~~~~~ 206 (294)
T 1ixc_A 154 -GIEIVNIAQEDLYLAVHRSQSGKFG----------------------KTCKLADL----RAVELTLFPRGGRPSFADEV 206 (294)
T ss_dssp -TEEEEEEEEEEEEEEEEGGGGGGTC----------------------SEECGGGG----TTCEEEECCCSSSSCHHHHH
T ss_pred -CCCCCCCCCCEEEEEEECCCHHHCC----------------------CCCCHHHH----HCCCEEEECCCCCCCHHHHH
T ss_conf -5422201352079998273076539----------------------99999998----18997996387675146777
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL 262 (346)
Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~ 262 (346)
.+.....+... ..+-..++...+.+.+.. ..+++.++..........+..
T Consensus 207 ~~~~~~~g~~~-----------------------------~~~~~~~~~~~~~~lv~~-g~gia~lp~~~~~~~~~~~~~ 256 (294)
T 1ixc_A 207 IGLFKHAGIEP-----------------------------RIARVVEDATAALALTMA-GAASSIVPASVAAIRWPDIAF 256 (294)
T ss_dssp HHHHHHTTCCC-----------------------------EEEEECSSHHHHHHHHHT-TSCBEEEEHHHHTSCCTTEEE
T ss_pred HHHHHCCCCCC-----------------------------CEEEEECCHHHHHHHHHH-CCEEEECCHHHHHHHCCCEEE
T ss_conf 77653245477-----------------------------446886579999999994-997998108898552298599
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 34457678955602798750367899970788566889999999974
Q gi|254780707|r 263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSV 309 (346)
Q Consensus 263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~l 309 (346)
++ -...|+.+++|++.++.. ..+.++.|++++-
T Consensus 257 ~~------------l~~~~~~~~~~li~~~~~--~~p~~~~fi~~l~ 289 (294)
T 1ixc_A 257 AR------------IVGTRVKVPISCIFRKEK--QPPILARFVEHVR 289 (294)
T ss_dssp EE------------ECCTTCEEEEEEEEESSS--CCHHHHHHHHHHH
T ss_pred EE------------CCCCCCEEEEEEEEECCC--CCHHHHHHHHHHH
T ss_conf 97------------789886038999997999--9989999999999