HHsearch results for GI: 254780707 and protein with PDBid: 1us5_A
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=97.91 E-value=0.00031 Score=41.08 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC---CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 924899999999999983142013767999803---42589999999999987798079998157620578988521013
Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGS---STLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGD 77 (346)
Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GS---st~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~ 77 (346)
||+.++..++ .++.+.++++|+++.+ ++-+++...+++..++..+++++.+....||..=+..+.+|.
T Consensus 1 m~~~ila~l~-------~a~~a~A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~-- 71 (314)
T 1us5_A 1 MRKPILAALT-------LAGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGE-- 71 (314)
T ss_dssp -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTS--
T ss_pred CCHHHHHHHH-------HHCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCC--
T ss_conf 9389999999-------7243423314899979999714999999999997358984899980788899999997699--
Q ss_pred CCCCEEECCCCC
Q ss_conf 353012133202
Q gi|254780707|r 78 DTIDIVNSSRKI 89 (346)
Q Consensus 78 ~~~dig~ssr~l 89 (346)
+|+|.+.-..
T Consensus 72 --~d~a~~~~~~ 81 (314)
T 1us5_A 72 --FEMALAQNDI 81 (314)
T ss_dssp --CSEEEEEHHH
T ss_pred --CCEEEECHHH
T ss_conf --7199975089