HHsearch results for GI: 254780707 and protein with PDBid: 2h9b_A

>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=97.51  E-value=0.0033  Score=35.38  Aligned_cols=203  Identities=13%  Similarity=0.126  Sum_probs=119.5

Q ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             376799980342589-9999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r   24 ARNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV  102 (346)
Q Consensus        24 a~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~  102 (346)
                      ....++|+...++.. ++..+...|.+.+|++.+. +....+...+..+.+|.    +||+.+..+..+.          
T Consensus        88 ~~~~l~i~~~~~~~~~~l~~~l~~~~~~~p~v~l~-~~~~~~~~l~~~l~~g~----~Dlai~~~~~~~~----------  152 (312)
T 2h9b_A           88 VEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIE-LYEMGTKAQTEALKEGR----IDAGFGRLKISDP----------  152 (312)
T ss_dssp             -CCEEEEEECGGGGGTTHHHHHHHHHHTCTTCEEE-EEECCHHHHHHHHHTTS----CSEEEESSCCCCT----------
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-ECCCCCHHHHHHHHCCC----CCEEEEECCCCCC----------
T ss_conf             57459997535668999999999999978997785-31355077999997699----6479960688987----------


Q ss_pred             CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf             87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r  103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL  182 (346)
Q Consensus       103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F  182 (346)
                       .+...++..+..+++.+...+.....                    ....+|.|+    .+.|...+.+...++.+..+
T Consensus       153 -~~~~~~l~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~dl----~~~~~i~~~~~~~~~~~~~~  207 (312)
T 2h9b_A          153 -AIKHSLLRNERLMVAVHASHPLNQMK--------------------DKGVHLNDL----IDEKILLYPSSPKPNFSTHV  207 (312)
T ss_dssp             -TEEEEEEEEEEEEEEEETTSGGGGGT--------------------TTCBCGGGS----TTSEEEECCCSSSSSHHHHH
T ss_pred             -CCEEEEECCCEEEEEECCCCHHHHCC--------------------CCCCHHHHH----CCCCEEEECCCCCCCHHHHH
T ss_conf             -61799811305999963788466533--------------------432025564----37977984287665124666


Q ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             98851345556541011111013660001344431024664021166236777631015321001332001100111001
Q gi|254780707|r  183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADVLKL  262 (346)
Q Consensus       183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~~~~~~  262 (346)
                      .......+...                             ...-..++...+.+.+... .+++.++..........+..
T Consensus       208 ~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~~v~~g-~gi~ilP~~~~~~~~~~l~~  257 (312)
T 2h9b_A          208 MNIFSDHGLEP-----------------------------TKINEVREVQLALGLVAAG-EGISLVPASTQSIQLFNLSY  257 (312)
T ss_dssp             HHHHHTTTCCC-----------------------------SEEEECSSHHHHHHHHHTT-SCBEEEEGGGGGBCCTTEEE
T ss_pred             HHHHHHCCCCC-----------------------------CEEEECCCHHHHHHHHHCC-CEEEEECHHHHHHHHCCEEE
T ss_conf             66666507886-----------------------------1465316799999999839-95999209887453388799


Q ss_pred             CCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             344576789556027987503678999707885668899999999749
Q gi|254780707|r  263 VPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       263 ~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      +++          .+  =++.+++|++.++.  ...+.++.|++++-.
T Consensus       258 ~pl----------~~--~~~~~~~~l~~r~~--~~~~~~~~~~~~~~~  291 (312)
T 2h9b_A          258 VPL----------LD--PDAITPIYIAVRNM--EESTYIYSLYETIRQ  291 (312)
T ss_dssp             EEB----------CS--TTCEEEEEEEEETT--CCCHHHHHHHHHHHH
T ss_pred             EEC----------CC--CCCEEEEEEEEECC--CCCHHHHHHHHHHHH
T ss_conf             985----------79--88632899999799--999899999999999