HHsearch results for GI: 254780707 and protein with PDBid: 2ql3_A

>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=97.26  E-value=0.0068  Score=33.65  Aligned_cols=200  Identities=10%  Similarity=0.052  Sum_probs=108.7

Q ss_pred             CCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             76799980342589-99999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r   25 RNRIRIAGSSTLFP-YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS  103 (346)
Q Consensus        25 ~~~I~i~GSst~~P-~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~  103 (346)
                      +++|+|+-+.++.. ++..+...|++.||++++. +....+..-.+.+.+|.    +|+|....+....           
T Consensus         4 ~G~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~-i~~~~~~~l~~~l~~g~----~Dl~i~~~~~~~~-----------   67 (209)
T 2ql3_A            4 AGPIAVGCYPALGPTILPSMLYAFTAEYPRASVE-FREDTQNRLRTQLEGGE----LDVAIVYDLDLSP-----------   67 (209)
T ss_dssp             CEEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEE-EEECCHHHHHHHHHTTS----CSEEEEESSSCCT-----------
T ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CEEEEEECCCCCC-----------
T ss_conf             2899999688999999999999999988793899-99898289998760798----3588530465420-----------


Q ss_pred             CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf             72466652154125541666545688888887641025555532367302323100111224503544885423578999
Q gi|254780707|r  104 DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLE  183 (346)
Q Consensus       104 ~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F~  183 (346)
                      .+...++..+...+++..+.+....                     .....|.++    .+.|+..+  +..+... .+.
T Consensus        68 ~~~~~~~~~~~~~~v~~~~~~la~~---------------------~~~i~~~~l----~~~~~i~~--~~~~~~~-~~~  119 (209)
T 2ql3_A           68 EWQTVPLMTREPMVVLGAEHPLAGV---------------------DGPVRLADL----AEHPMVLL--DAPPSTN-HAM  119 (209)
T ss_dssp             TEEEEEEEEECCEEEEETTCGGGGC---------------------CSCBCGGGG----TTSCEEEE--CCTTHHH-HHH
T ss_pred             CHHEECCCCCCCCCCCCCCCHHHHC---------------------CCCCCHHHH----HCCCEEEC--CCCCHHH-HHH
T ss_conf             0000001211222224689834517---------------------996679988----33985632--8995188-999


Q ss_pred             HHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHCC---CCC
Q ss_conf             88513455565410111110136600013444310246640211662367776310153210013320011001---110
Q gi|254780707|r  184 KKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNA---DVL  260 (346)
Q Consensus       184 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~igy~~~~~~~~~~---~~~  260 (346)
                      +.....+..                             ....-..++...+.+.+. ...++++++...+....   ..+
T Consensus       120 ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~lv~-~g~Gi~~lp~~~~~~~~~~~~~~  169 (209)
T 2ql3_A          120 DVCREAGFA-----------------------------PRVAYRTANFETARAFVG-RGLGWTLLLQRPRVDVTYEGLPV  169 (209)
T ss_dssp             HHHHHHTCC-----------------------------CCEEEEESCHHHHHHHHH-HTSCBEEESCCCSSCBCTTSCBE
T ss_pred             HHHHHCCCC-----------------------------CEEEEEECCHHHHHHHHH-CCCEEEEEEHHHHHHHHHCCCCE
T ss_conf             999974999-----------------------------506998263777899998-19959990268887786479978


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             01344576789556027987503678999707885668899999999749
Q gi|254780707|r  261 KLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS  310 (346)
Q Consensus       261 ~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls  310 (346)
                      .      +.|-     ...-|+.+.++++.++ +....+.++.|++|+..
T Consensus       170 ~------~~pl-----~~~~~~~~~i~l~~~~-~~~~s~~~~~Fi~~l~a  207 (209)
T 2ql3_A          170 V------VKPI-----AEPKPASVAVVVAWHQ-EATLSRVARAFIRFVTA  207 (209)
T ss_dssp             E------EEEB-----CSSCCCCEEEEEEEET-TCCCCHHHHHHHHHHTC
T ss_pred             E------EEEC-----CCCCCCEEEEEEEECC-CCCCCHHHHHHHHHHHC
T ss_conf             9------9977-----8888744799999919-89779999999999864