HHsearch results for GI: 254780707 and protein with PDBid: 3c9h_A
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=98.97 E-value=1.6e-08 Score=65.04 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHHCC--------CCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 92489999999999998314--------2013767999803425899999999999877980799981576205789885
Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGT--------GTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC 72 (346)
Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~--------~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~ 72 (346)
||+.+.+++++.+.+..++. +.....+|++-.++ -.++++.+.++|+++|||++|. ++..+++...+++.
T Consensus 1 ~~~~l~l~l~~~~a~~ala~~~~~~~~~~~~~~~~l~v~s~~-~~~~~~~li~~Fe~~~PgI~V~-~~~~~~~~~~~kl~ 78 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSL-DEPLATPMIEGFQKANPDIAVH-YEDMLTGEIYDRIV 78 (355)
T ss_dssp ---------------CEEEEEEEECCTTC----CEEEEEECS-CHHHHHHHHHHHHHHCTTCEEE-EEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHH
T ss_conf 907999999999999999888642343567779979999798-8789999999999878893899-99688589999999
Q ss_pred HHCC--CCCCCEEECCCCCCHHHHHHHHH--------------CCCCCCEEEEEECCCCEEEECCCCCC
Q ss_conf 2101--33530121332024767876762--------------48787246665215412554166654
Q gi|254780707|r 73 RGIG--DDTIDIVNSSRKITQNELDECKK--------------HGVSDIQEVTIGHDGILLVSDRDMVS 125 (346)
Q Consensus 73 ~G~~--~~~~dig~ssr~l~~~E~~~~~~--------------~~~~~~~~~~v~~d~i~i~~n~~~~~ 125 (346)
.... +...|+...+....-..+..... .........+...++.++++|.....
T Consensus 79 ~~~~ag~~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~ 147 (355)
T 3c9h_A 79 KETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFT 147 (355)
T ss_dssp HHHHTTCCBCSEEEESCHHHHHHHHHTTCEECCCCTTTTTSCGGGEETTTEEECBCEEEEEEEEGGGCS
T ss_pred HHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHCCCHHCCCCCCEEECCCEEEEEEEECCCCC
T ss_conf 875148986426761657899999966874457712220360220566855500120689999433333