HHsearch results for GI: 254780707 and protein with PDBid: 3fxq_A
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=96.70 E-value=0.022 Score=30.77 Aligned_cols=200 Identities=13% Similarity=0.220 Sum_probs=112.6
Q ss_pred CCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 37679998034258-99999999999877980799981576205789885210133530121332024767876762487
Q gi|254780707|r 24 ARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGV 102 (346)
Q Consensus 24 a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~ 102 (346)
...+|+|+.+.+.. .+...+..+|.+.+|++.+. +....+..-+..+.+|. .|++....+..+.+
T Consensus 90 ~~~~l~I~~~~~~~~~~l~~~i~~~~~~~p~i~i~-i~~~~~~~~~~~l~~g~----~Di~i~~~~~~~~~--------- 155 (305)
T 3fxq_A 90 WEGHITFAASPAIALAALPLALASFAREFPDVTVN-VRDGMYPAVSPQLRDGT----LDFALTAAHKHDID--------- 155 (305)
T ss_dssp HHTEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEE-EEECCTTTTHHHHHHTS----SSEEEEECCGGGSC---------
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHHHHCCC----EEEEEEECCCCCCC---------
T ss_conf 66259996246302767899999999978997676-57448177777875597----34899840554356---------
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 87246665215412554166654568888888764102555553236730232310011122450354488542357899
Q gi|254780707|r 103 SDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVL 182 (346)
Q Consensus 103 ~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~~~SGT~~~F 182 (346)
..+...++..+.++++++.+.|..+. ..+.++ ...|+. .+...++++..+
T Consensus 156 ~~l~~~~l~~~~~~~~~~~~hpl~~~------------------------~~l~~l----~~~~~i--~~~~~~~~~~~~ 205 (305)
T 3fxq_A 156 TDLEAQPLYVSDVVIVGQRQHPMANA------------------------TRLAEL----QECRWA--FSSAPRGPGAII 205 (305)
T ss_dssp TTEEEEEEEECCEEEEEETTCTTTTC------------------------CSGGGG----TTSEEE--EECCTTSTTHHH
T ss_pred CCCEEEECCCCCEEEEECCCCCCCCC------------------------CCHHHH----HCCEEE--EECCCCCCCHHH
T ss_conf 88437871444179998688845689------------------------895675----302145--523776531257
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEC-CCCHHHHHHHHCCCCCCCCCCCCCHHHHC--CCC
Q ss_conf 988513455565410111110136600013444310246640211-66236777631015321001332001100--111
Q gi|254780707|r 183 EKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEV-DGDYTETLARIEVNKDVFGFVGLSFYKNN--ADV 259 (346)
Q Consensus 183 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~v~~~~~~igy~~~~~~~~~--~~~ 259 (346)
.+.....+... ..+.. .++...+...+. ....++.++...+... ...
T Consensus 206 ~~~~~~~~~~~-----------------------------~~i~~~~~~~~~~~~~v~-~g~gi~~lp~~~~~~~~~~~~ 255 (305)
T 3fxq_A 206 RNAFARYGLPE-----------------------------PKLGLVCESFLALPGVVA-HSDLLTTMPRTLYERNAFKDQ 255 (305)
T ss_dssp HHHHHHTTCCC-----------------------------CEEEEEECCTTTHHHHHH-TSSCEEEEEHHHHHSSTTGGG
T ss_pred HHHHHHCCCCC-----------------------------CCCCCCCCCHHHHHHHHH-CCCEEEECCHHHHHHHHHCCC
T ss_conf 78999719863-----------------------------223333367999999997-499899811999985513799
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 001344576789556027987503678999707885668899999999749
Q gi|254780707|r 260 LKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVS 310 (346)
Q Consensus 260 ~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls 310 (346)
+..++++ + -+..+.+|++.++. ....+.++.|++++-.
T Consensus 256 l~~~~l~-----------~-~~~~~~~~l~~~~~-~~~~~~~~~fi~~i~~ 293 (305)
T 3fxq_A 256 LCSIPLQ-----------D-ALPNPTIYVLRRHD-LPVTPAAAGLIRWIQH 293 (305)
T ss_dssp EEECCCS-----------S-CCCCCEEEEEEETT-SCCCHHHHHHHHHHHH
T ss_pred EEEEECC-----------C-CCCCCEEEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 8999688-----------8-88776899999896-9889999999999999