HHSEARCH alignment of GI: 254780707 and SCOP domain: d1y4ta_

Alignment
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]}
Probab=97.41  E-value=0.00082  Score=37.44  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCC--------------CHHH
Q ss_conf             99980342589999999999987798079998157620578988521013353012133202--------------4767
Q gi|254780707|r   28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKI--------------TQNE   93 (346)
Q Consensus        28 I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l--------------~~~E   93 (346)
                      |+|-.+.. +-..+.+.++|++++ |++|. +...+|+.-+.++.+...+...|+..++..-              ....
T Consensus         3 v~iy~~~~-~~~~~~i~~~Fek~t-GIkV~-~~~~~~~~~~~kl~ae~~~~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~   79 (317)
T d1y4ta_           3 LNIYSARH-YNADFEIIKKFEEKT-GIKVN-HTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKY   79 (317)
T ss_dssp             EEEEECCC-CTHHHHHHHHHHHHH-CCCEE-EEECCHHHHHHHHHHHGGGCCCCEEEESSHHHHHHHHHTTCEECCCCHH
T ss_pred             EEEEECCC-CCHHHHHHHHHHHHH-CCEEE-EEECCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCC
T ss_conf             89984898-450799999999986-98899-9979829999999974899997099968789999987631035433210


Q ss_pred             HHHHH--HCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEC
Q ss_conf             87676--2487872466652154125541666545688888887641025555532367302323100111224503544
Q gi|254780707|r   94 LDECK--KHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYV  171 (346)
Q Consensus        94 ~~~~~--~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~  171 (346)
                      .....  ..........++.....++++|++..                      ....+.++|.|+--  |...-.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~----------------------~~~~~p~tw~dL~~--~~~~~~~~~  135 (317)
T d1y4ta_          80 LEEFIPAHLRDKDKEWFAITKRARIIAYNKNTN----------------------IDISKMKNYEDLAK--AEFKGEIVM  135 (317)
T ss_dssp             HHHHSCGGGBCTTSSCEEEEEEEEEEEEETTSC----------------------CCCTTCCSGGGGGC--GGGTTCEEC
T ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCHHHHCC--CCCCCCEEE
T ss_conf             232031665411235555432344432333321----------------------24668888788503--000472443


Q ss_pred             CCCCCCHHHHH
Q ss_conf             88542357899
Q gi|254780707|r  172 PSGKHGTREVL  182 (346)
Q Consensus       172 r~~~SGT~~~F  182 (346)
                      ....+++...+
T Consensus       136 ~~~~~~~~~~~  146 (317)
T d1y4ta_         136 RSATAPYSKTL  146 (317)
T ss_dssp             CCTTSHHHHHH
T ss_pred             ECCCCHHHHHH
T ss_conf             02440267788


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Ferric-binding protein FbpA
species: Campylobacter jejuni [TaxId: 197]