RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding
periplasmic protein [Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)



>gnl|CDD|30575 COG0226, PstS, ABC-type phosphate transport system, periplasmic
           component [Inorganic ion transport and metabolism].
          Length = 318

 Score =  130 bits (328), Expect = 5e-31
 Identities = 63/323 (19%), Positives = 120/323 (37%), Gaps = 48/323 (14%)

Query: 19  GTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDD 78
              + A   + IAGS+T+ P  +  AE F + +P  K   V++GGS  G+K+   G    
Sbjct: 36  SESSGASGSLTIAGSTTVAPLMEAWAEEFQKAYPNVKVN-VQAGGSGAGIKQALAG---- 90

Query: 79  TIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALA 138
            +DI  SSR +  +E +   K G   + E  +  D I+++ +     V    +D    + 
Sbjct: 91  GVDIGASSRPLKDSEKEADAKAG-KKLVEFPVAIDAIVVIVNLPNPDVLNLTKDQLADIF 149

Query: 139 SYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFS 198
           S            +  W+++        I +   S   GT E   + +L           
Sbjct: 150 S----------GKITNWNDVGGQLLNPGITVVGRSDGSGTTETFTEYLL----------- 188

Query: 199 KMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNAD 258
                     ++   A  +V     A          +A +       G+VG ++   N  
Sbjct: 189 --------GWKKKVGAGKTVDWP--AAVGGKGNEGVVAAVSQTPGAIGYVGYAYAVQNNL 238

Query: 259 VLKLVPID------GIVPSMGTIVSGLY-PISRPLLFYVKRQHFNSVL-GLREYVSFSVS 310
            L  +          + P+   I +G Y PI RPL  YV +   ++    ++ ++ +++S
Sbjct: 239 KLAALANKAGGVGPTVEPTAENIANGKYSPIVRPLFIYVNKNPKDTKAPAVKAFLDWALS 298

Query: 311 DEMMAPDSQLFQYGLIPISNEER 333
                    + + G +P+ +   
Sbjct: 299 PGGQQ---IVEEVGYVPLPDAVV 318


>gnl|CDD|144605 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase
           family.  The enzyme 3 beta-hydroxysteroid
           dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD)
           catalyses the oxidation and isomerisation of 5-ene-3
           beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid
           precursors into the corresponding 4-ene-ketosteroids
           necessary for the formation of all classes of steroid
           hormones.
          Length = 280

 Score = 28.1 bits (63), Expect = 3.3
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 77  DDTIDIVNSSRKITQNELDECKKHGV 102
            DTI  VN   K TQN LD C K GV
Sbjct: 85  RDTIMKVNV--KGTQNVLDACVKAGV 108


>gnl|CDD|32505 COG2358, Imp, TRAP-type uncharacterized transport system,
          periplasmic component [General function prediction
          only].
          Length = 321

 Score = 27.2 bits (60), Expect = 7.2
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 19 GTGTFARNR-IRIAGSSTLFPYSKI---IAENFSEYFPEFKTPFVESGGSSVGLKEFCRG 74
           TG  A  + I I   ST   Y  I   +A+  ++     +   V +GGS   LK    G
Sbjct: 18 STGPAAEPKFITIGTGSTGGVYYPIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASG 77


>gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
           replication, recombination, and repair].
          Length = 408

 Score = 26.8 bits (59), Expect = 9.5
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 115 ILLVSDRDMVSVSLTVEDLYKALASYLIV-----DDKVVFNPLKKWSEIRPDFPEVRIAI 169
           I+L SDR    ++   + L   L   L+V     DD+     L+K +E R       +  
Sbjct: 211 IVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLE 270

Query: 170 YVPSGKHGTREVLE 183
           ++   K   R V E
Sbjct: 271 FL--AKRLDRNVRE 282


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,209,511
Number of extensions: 227662
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 251
Effective length of database: 4,210,882
Effective search space: 1056931382
Effective search space used: 1056931382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)