RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding
periplasmic protein [Candidatus Liberibacter asiaticus str. psy62]
(346 letters)
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor,
immonodominant antigen, ION-dipole interactions,
electrostatics; 2.16A {Mycobacterium tuberculosis H37RV}
SCOP: c.94.1.1
Length = 350
Score = 119 bits (298), Expect = 1e-27
Identities = 46/353 (13%), Positives = 96/353 (27%), Gaps = 58/353 (16%)
Query: 20 TGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDT 79
T + + GS+ L+P + F E +P T + GS G+ + G T
Sbjct: 21 TPASSPVTLAETGSTLLYPLFNLWGPAFHERYPNV-TITAQGTGSGAGIAQAAAG----T 75
Query: 80 IDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALAS 139
++I S +++ ++ K + + + + + VS L + A
Sbjct: 76 VNIGASDAYLSEGDMAAHKG-----LMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMY 130
Query: 140 YLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSK 199
K +P + P + S G + + + ++
Sbjct: 131 Q--GTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPG 188
Query: 200 MRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN--- 256
+ + +G A ++G+SF
Sbjct: 189 FGTTVDFP----------AVPGALGENGNGGMVTGCAE---TPGCVAYIGISFLDQASQR 235
Query: 257 --------------------------ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYV 290
A P + + + YPI V
Sbjct: 236 GLGEAQLGNSSGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIINYEYAIV 295
Query: 291 KRQHFNSVLG--LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341
+ ++ L+ ++ ++++D S L Q P+ K IA
Sbjct: 296 NNRQKDAATAQTLQAFLHWAITDG--NKASFLDQVHFQPLPPAVVKLSDALIA 346
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high
resolution, phosphate bindin protein; 0.98A {Escherichia
coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A
1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A
2z22_X
Length = 321
Score = 116 bits (291), Expect = 7e-27
Identities = 41/340 (12%), Positives = 88/340 (25%), Gaps = 60/340 (17%)
Query: 28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSR 87
+ AG++ P A+ + + + GSS G+K+ T+D S
Sbjct: 4 LTGAGATFPAPVYAKWADTYQKETG--NKVNYQGIGSSGGVKQIIAN----TVDFGASDA 57
Query: 88 KITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKV 147
++ ++ + G+ V G + + + L + L K
Sbjct: 58 PLSD---EKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLG----KIKK 110
Query: 148 VFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYN 207
+ P IA+ + GT V + + +K N
Sbjct: 111 WDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNE-----------EWKNN 159
Query: 208 VQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNNADV---LKLVP 264
V T A ++ G+V ++ K N L
Sbjct: 160 V------GTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLISAD 213
Query: 265 IDGIVPSMGTIVSGL---------------------YPISRPLLFYVKRQHFNSVLG--L 301
+ P+ + +PI+ + + G +
Sbjct: 214 GKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEV 273
Query: 302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIA 341
++ ++ Q + + + VR +
Sbjct: 274 LKFFDWAYKTG----AKQANDLDYASLPDSVVEQVRAAWK 309
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc
target, structural genomics, protein structure
initiative; 1.65A {Vibrio cholerae o1 biovar eltor str}
SCOP: c.94.1.1
Length = 290
Score = 91.7 bits (226), Expect = 2e-19
Identities = 57/332 (17%), Positives = 117/332 (35%), Gaps = 54/332 (16%)
Query: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60
+ + +C ++ + T + I I+GS+++ ++AE +++ PE V+
Sbjct: 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVARIMDVLAEKYNQQHPETYVA-VQ 61
Query: 61 SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120
GS+ G+ DI +SR +T+ + + T+ DG+ +V +
Sbjct: 62 GVGSTAGISLLK----KGVADIAMTSRYLTE-------SEAQNTLHTFTLAFDGLAIVVN 110
Query: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180
+ +LT E LY + + W ++ + +IA+ GTR
Sbjct: 111 QANPVTNLTREQLY-----------GIYKGQITNWKQVGGNDQ--KIAVVTREASSGTRY 157
Query: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240
E + V+ R S + V + +
Sbjct: 158 SFESLMGLTKTVKDREVSDVAPTA---------------------LVVNSNSMMKTLVNH 196
Query: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300
N GF+ + + ++ + P+ I Y +SRP L + +
Sbjct: 197 NTQAVGFISIGSVDKSVKAIQ---FEKADPTSDNIAKHTYQLSRPFLILHYSDNADE--Q 251
Query: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEE 332
+E+++F S+ + +YG I S+ E
Sbjct: 252 TKEFIAFLKSESAKK---LIVEYGYIMPSDVE 280
>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein,
hydrogen ATOM, phosphate binding protein; 0.88A
{Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A
2v3q_A 2cap_A
Length = 381
Score = 81.2 bits (199), Expect = 3e-16
Identities = 36/380 (9%), Positives = 84/380 (22%), Gaps = 88/380 (23%)
Query: 28 IRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRG--------IGDDT 79
I G++ + + F GS G F + +
Sbjct: 3 INGGGATLPQA----LYQTSGVLTAGFAQ--YIGVGSGNGKAAFLNNDYTKFQAGVTNKN 56
Query: 80 IDIVNSSRKITQNELDECKKHG---VSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKA 136
+ S K++ EL + +V + + ++ +
Sbjct: 57 VHWAGSDSKLSATELSTYASAKQPTWGKLIQVPSVGTSVAIPFNKSGSAAVNLSVQ---- 112
Query: 137 LASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRN 196
V + W I I + S GT E+ + + + + N
Sbjct: 113 ------ELCGVFSGRINTWDGISGSGRTGPIVVVYRSESSGTTELFTRFLNAKCNAETGN 166
Query: 197 FSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGFVGLSFYKNN 256
F+ S A+ G + + ++ F
Sbjct: 167 FAVTTTFGTSF---------SGGLPAGAVAATGS-QGVMTALAAGDGRITYMSPDFAAPT 216
Query: 257 ADVLKLVPIDG-----IVPSMGTI------------------------------------ 275
L + + +
Sbjct: 217 LAGLDDATKVARVGKNVATNTQGVSPAAANVSAAIGAVPVPAAADRSNPDAWVPVFGPDN 276
Query: 276 -------VSGLYPISRPLLFYVKRQHFNSVLG--LREYVSFSVSDEMMAPDSQLFQYGLI 326
+ YPI + + ++ +R++ + D+ + +
Sbjct: 277 TAGVQPYPTSGYPILGFTNLIFSQCYADATQTTQVRDFFTKHYGASNNN-DAAITANAFV 335
Query: 327 PISNEERKSVRDSIAVGKSG 346
P+ + +VR S +
Sbjct: 336 PLPTAWKATVRASFLTASNA 355
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic,
structural genomics, protein structure initiative; 1.97A
{Coccidioides immitis RS}
Length = 294
Score = 63.7 bits (154), Expect = 6e-11
Identities = 36/305 (11%), Positives = 81/305 (26%), Gaps = 56/305 (18%)
Query: 15 EVYCG--TGTFARNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVE----SGGSSVG 67
+VY G + ++RI G + K +A+ F + + + + ++V
Sbjct: 7 DVYDGGYGSKHSPVQLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVT 66
Query: 68 LKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVS 127
+ G +D+ + + + KHG+S+ D +L+ +
Sbjct: 67 INYLKDG----IVDVGITYSPVAERIS---IKHGISESPSYYAFRDHFMLIGPPSNPAKL 119
Query: 128 LTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEKKVL 187
D+ F+ + +E P VR
Sbjct: 120 SGDSDIADM------------FSKMHDAAEAGNTKPPVRFLSRYDK-------------- 153
Query: 188 QEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDVFGF 247
S + + + + L + ++
Sbjct: 154 ----------SATNIKEAELWLSIGQVPWATAYSTWYHQYITFPIQALTAAILLREYTIT 203
Query: 248 VGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSF 307
++ D +V P+ P V + N+ + +E+ +
Sbjct: 204 DYGTYLSIPRG-----LRDQMVIYKKGTNDADDPLLNPAHLLVGARAKNAEMA-KEFAKW 257
Query: 308 SVSDE 312
VS E
Sbjct: 258 LVSKE 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.9 bits (111), Expect = 7e-06
Identities = 67/395 (16%), Positives = 113/395 (28%), Gaps = 172/395 (43%)
Query: 13 VLEVYCGTGTFARNRIRIAGSSTLF-----PYSKIIA-----ENFSEYFPE----FKT-- 56
+++ Y A+ +S LF ++++A N +YF E ++T
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 57 PFVESGGSSVG--LKEFCRGIGDDT--------IDIVN-----SSR-------------- 87
V L E R ++I+ S+
Sbjct: 182 VLVGDLIKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 88 ----------KITQNELDECKKHGVS--DIQE----VTIGHD-GILLVSDRDMVSVSLTV 130
+T K G + +++ T GH G++ ++ + +
Sbjct: 240 LIGVIQLAHYVVT------AKLLGFTPGELRSYLKGAT-GHSQGLVTAV---AIAETDSW 289
Query: 131 EDLYKALASYLIVDDKVVFNPLKKW--SEIRPDFPEVRIAIYVPSGKHGTREVLEKKVLQ 188
E + ++ + V+F + +P + PS +L+
Sbjct: 290 ESFFVSVRKAI----TVLF-----FIGVRCYEAYPNTSLP---PS------------ILE 325
Query: 189 ------EGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIE-VDGDYTETLARIEVN 241
EG S M LS++ + E V +T + +
Sbjct: 326 DSLENNEGVP-----SPM----------LSIS-------NLTQEQVQDYVNKTNSHLPAG 363
Query: 242 KDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGL 301
K V + L N A L +VSG P S L N L L
Sbjct: 364 KQV--EISLV---NGAKNL--------------VVSGP-PQS--L------YGLN--LTL 393
Query: 302 REYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSV 336
R + AP S L Q IP S ERK
Sbjct: 394 R---------KAKAP-SGLDQ-SRIPFS--ERKLK 415
Score = 45.3 bits (107), Expect = 2e-05
Identities = 57/307 (18%), Positives = 101/307 (32%), Gaps = 112/307 (36%)
Query: 105 IQEVTIGHDGILLVSDRDMVSVSLT-VEDLY------KALASYLIVDDKVVFNPLKKWSE 157
V G ++++ LT E+ Y ALA+ L+ ++ K+
Sbjct: 69 SSLVEPSKVG----QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-- 122
Query: 158 IRPDFPEVRIAIYVPSGKHGT----REVLEKKV-L------Q---EGCVRSRNFSKMRDM 203
I+ ++ RI P K R V E L Q + F ++RD+
Sbjct: 123 IK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-----FEELRDL 176
Query: 204 FK-YN--VQQLSVACTSVRQDGIAIEVDGDYTETLARIEVN-KDVFGFVGLSFYKNNADV 259
++ Y+ V L I+ + L R ++ + VF GL ++
Sbjct: 177 YQTYHVLVGDL-------------IKFSAETLSELIRTTLDAEKVFTQ-GL-------NI 215
Query: 260 LKLVPIDGIVPSMGTIVSGLYPISRPLL-------FYV--KRQHFNSVLG-----LREYV 305
L+ + P ++S PIS PL+ + V K +LG LR Y+
Sbjct: 216 LEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAK------LLGFTPGELRSYL 267
Query: 306 S--------------FSVSDEMMAPDS----------QLFQYGL-----IPISNEERKSV 336
+ +D + +S LF G+ P ++ +
Sbjct: 268 KGATGHSQGLVTAVAIAETD---SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 337 RDSIAVG 343
DS+
Sbjct: 325 EDSLENN 331
Score = 32.2 bits (73), Expect = 0.16
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 47/144 (32%)
Query: 3 FFFVVLMCFVVLEVYCGTGTFARNRI-RIAGSSTLFPYSKIIA---ENFSEYFPEFKTPF 58
FF V VL + G R +++L P I+ EN +E P +P
Sbjct: 292 FFVSVRKAITVL-FFIGV------RCYEAYPNTSLPP--SILEDSLEN-NEGVP---SPM 338
Query: 59 VESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLV 118
+ S+ + +++ Q+ +++ H + ++V I LV
Sbjct: 339 L-----SI------SNL----------TQEQVQDYVNKTNSHLPAG-KQVEIS-----LV 371
Query: 119 -SDRDMVSVSLTVEDLYKALASYL 141
+++V VS + LY L L
Sbjct: 372 NGAKNLV-VSGPPQSLY-GLNLTL 393
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 30.1 bits (66), Expect = 0.69
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEF 71
++++V CG GT + P+ +II + S + E + F
Sbjct: 39 LLVDVGCGPGTATLQMAQELK-----PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 72 CRGIGDD 78
DD
Sbjct: 94 KISSSDD 100
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Length = 225
Score = 29.1 bits (64), Expect = 1.6
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSE 49
V +++ G G ++A + I + +
Sbjct: 27 VHIDLGTGDGRNI---YKLAI---NDQNTFYIGIDPVK 58
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A
{Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 28.7 bits (63), Expect = 1.8
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAG---SSTLFPYSKIIAENFSEYFPEFKTP 57
MR + + A+ I I + FP + IA+ ++ +
Sbjct: 1 MRKPILAALTL-------AGLGLAQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRAN 53
Query: 58 FVESGGSSVGLKEFCRGIGD 77
+GGS + G +
Sbjct: 54 ARSTGGSVANINAINAGEFE 73
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center
for structural genomics of infectious diseases, csgid,
transcription; HET: MSE; 2.00A {Shigella flexneri 2a
str} SCOP: c.124.1.8
Length = 266
Score = 28.4 bits (63), Expect = 2.5
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 74 GIGD-DTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSLTVE 131
GIG D N E D+ DI G ++ ++ ++S+ +
Sbjct: 162 GIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMN 221
Query: 132 DLYKA 136
L +A
Sbjct: 222 KLKQA 226
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus HB8} PDB: 2yr0_A
Length = 263
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYF 51
V LE+ GTG A I + E F +
Sbjct: 42 VFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI 81
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 28.0 bits (61), Expect = 3.4
Identities = 15/172 (8%), Positives = 45/172 (26%), Gaps = 16/172 (9%)
Query: 13 VLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC 72
VL++ C G + IA + S+++ + + S L+
Sbjct: 50 VLDLGCNVGHLT---LSIACK---WGPSRMVGLDIDSRLIHSARQNIRHYLSE-ELRLPP 102
Query: 73 RGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVED 132
+ + D + +T I + + +
Sbjct: 103 QTLEGDPGAEGEE--------GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPN 154
Query: 133 LYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTREVLEK 184
+ ++D + ++ + +++ G G + + +
Sbjct: 155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRR 205
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus}
Length = 185
Score = 27.3 bits (60), Expect = 5.1
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGG 63
+V++ G G +AG K+ A + E + + G
Sbjct: 25 IVVDATMGNGNDT---AFLAG-----LSKKVYAFDVQEQALGKTSQRLSDLG 68
>3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint
center for structural genomics, JCSG; 1.64A {Bacillus
cereus atcc 10987}
Length = 230
Score = 27.1 bits (58), Expect = 5.5
Identities = 16/105 (15%), Positives = 33/105 (31%)
Query: 13 VLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC 72
VL++ C +G + AE E +E+ ++F
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFD 95
Query: 73 RGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILL 117
I D ++ + + + K++GV + H +L
Sbjct: 96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLA 140
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 27.0 bits (59), Expect = 7.0
Identities = 6/44 (13%), Positives = 9/44 (20%)
Query: 12 VVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFK 55
V ++V CGTG +
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 26.5 bits (58), Expect = 8.9
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 71 FCRGIGD-DTIDIVNSSRKITQNELDECKKHG-VSDIQEVTIGHDGILLVSDRDMVSVSL 128
GIG D N E D+ DI +G L+ ++ ++S+
Sbjct: 208 ALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSI 267
Query: 129 TVEDLYKA 136
+ L +A
Sbjct: 268 EMAKLRQA 275
>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP
pathway, oxidoreductase, isoprene biosynthesis,
metal-binding; 1.9A {Mycobacterium tuberculosis} PDB:
2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A*
Length = 413
Score = 26.6 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 232 TETLARIEVNKDVFGFVGLSFYKNNADVL 260
T+ L I N D F VGL+ + D L
Sbjct: 26 TQALQVIADNPDRFEVVGLAAGGAHLDTL 54
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,017,893
Number of extensions: 144209
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 22
Length of query: 346
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 253
Effective length of database: 3,438,538
Effective search space: 869950114
Effective search space used: 869950114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)