BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780707|ref|YP_003065120.1| putative phosphate-binding
periplasmic protein [Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60
           MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE
Sbjct: 1   MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVE 60

Query: 61  SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120
           SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD
Sbjct: 61  SGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSD 120

Query: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180
           RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE
Sbjct: 121 RDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPSGKHGTRE 180

Query: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240
           VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV
Sbjct: 181 VLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLARIEV 240

Query: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300
           NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG
Sbjct: 241 NKDVFGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLG 300

Query: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG 346
           LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG
Sbjct: 301 LREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKSVRDSIAVGKSG 346


>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 150

 Score = 27.7 bits (60), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 80  IDIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYK 135
           ID    ++ I QN+L E K+        V +G+    LVSDR M      V +LY+
Sbjct: 36  IDYAGIAQNIYQNQLSERKEGKKEFYDAVNMGYQLAPLVSDRRMKCNVKPVANLYQ 91


>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 26.2 bits (56), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 28/110 (25%)

Query: 241 NKDVFGFVG-LSFYKNN--ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNS 297
           N D++   G LSF + +  A  +  +   GI P + +I+  L              H+N 
Sbjct: 10  NLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLI------------NHYNK 57

Query: 298 VLGLREYVSF-------------SVSDEMMAPDSQLFQYGLIPISNEERK 334
           +L   E + +             +++++M     QL  YG  PI N   K
Sbjct: 58  ILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 23.9 bits (50), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 18/60 (30%)

Query: 99  KHGVSDIQEVTIGHDGILLVSDRDM------------------VSVSLTVEDLYKALASY 140
           +H V ++Q + +  D +L+ +DRD+                  V  +L V+D+YK   SY
Sbjct: 193 QHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSY 252


>gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score = 23.5 bits (49), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335
           +  LR +++FS   ++  P  ++F YG    S +E+K+
Sbjct: 70  IFWLRSFLAFSKYSKLSFPSCRIFFYG----SRKEQKA 103


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,429
Number of Sequences: 1233
Number of extensions: 9585
Number of successful extensions: 30
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 8
length of query: 346
length of database: 328,796
effective HSP length: 75
effective length of query: 271
effective length of database: 236,321
effective search space: 64042991
effective search space used: 64042991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)