Query gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 118 out of 525 Neff 5.6 Searched_HMMs 39220 Date Sun May 29 20:03:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780708.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK00259 intracellular septati 100.0 0 0 426.6 23.0 179 11-204 1-180 (181) 2 COG2917 Intracellular septatio 100.0 0 0 420.4 17.8 179 11-204 1-180 (180) 3 TIGR00997 ispZ intracellular s 100.0 0 0 416.8 20.3 182 11-201 1-186 (187) 4 pfam04279 IspA Intracellular s 100.0 0 0 410.5 22.5 175 11-200 1-176 (176) 5 COG4648 Predicted membrane pro 98.3 0.00021 5.4E-09 44.1 17.2 125 75-201 60-194 (201) 6 pfam11361 DUF3159 Protein of u 97.3 0.012 2.9E-07 34.2 14.4 164 17-197 11-185 (188) 7 cd02437 CCC1_like_1 CCC1-relat 65.5 9.4 0.00024 17.5 6.2 48 139-187 120-171 (175) 8 PRK13741 conjugal transfer ent 48.0 19 0.00048 15.8 3.7 36 124-159 47-82 (171) 9 TIGR01478 STEVOR variant surfa 45.7 21 0.00053 15.6 3.0 23 49-71 278-300 (315) 10 PRK01318 putative inner membra 43.6 22 0.00057 15.4 5.6 18 181-198 544-561 (565) 11 COG0573 PstC ABC-type phosphat 38.6 27 0.00068 15.0 4.6 61 47-120 85-147 (310) 12 pfam01169 UPF0016 Uncharacteri 37.5 28 0.00071 14.9 4.5 41 47-87 36-78 (78) 13 COG3776 Predicted membrane pro 37.4 28 0.00071 14.8 7.2 80 11-92 1-80 (91) 14 TIGR01876 cas_Cas5d CRISPR-ass 34.7 6.6 0.00017 18.4 -1.1 11 99-109 39-49 (235) 15 cd01118 ArsB_permease Anion pe 34.7 31 0.00079 14.6 6.1 17 99-115 242-258 (416) 16 KOG4609 consensus 34.5 10 0.00026 17.3 -0.2 25 122-146 226-250 (284) 17 PTZ00122 phosphoglycerate muta 31.5 15 0.00038 16.4 0.2 55 91-145 189-261 (296) 18 pfam11457 DUF3021 Protein of u 30.7 36 0.00092 14.2 7.7 41 77-117 46-86 (134) 19 COG2119 Predicted membrane pro 29.6 38 0.00097 14.1 5.8 115 47-167 40-163 (190) 20 PRK09584 tppB putative tripept 29.0 39 0.00099 14.0 14.8 189 5-204 270-493 (500) 21 pfam07444 Ycf66_N Ycf66 protei 28.9 39 0.00099 14.0 7.1 76 4-93 4-83 (84) 22 PRK05886 yajC preprotein trans 26.3 43 0.0011 13.7 2.2 19 11-29 1-19 (108) 23 COG4270 Predicted membrane pro 23.9 48 0.0012 13.5 4.7 106 80-201 13-126 (131) 24 cd00925 Cyt_c_Oxidase_VIa Cyto 23.7 49 0.0012 13.5 3.7 26 137-162 13-38 (86) 25 PHA00736 hypothetical protein 23.5 49 0.0013 13.4 4.5 58 54-117 18-75 (79) No 1 >PRK00259 intracellular septation protein A; Reviewed Probab=100.00 E-value=0 Score=426.63 Aligned_cols=179 Identities=33% Similarity=0.613 Sum_probs=175.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999860110001232122221479999999999999999999850878876899999999999988 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLT 90 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglT 90 (204) ||+++|++|+++||++|+++| |+.||+++|++|++|++++|+.+||+|+||++|++++++|||+| T Consensus 1 Mk~lle~~Pli~Ffi~y~~~~---------------i~~AT~~lm~at~i~~~~~~~~~kki~~~~~~~~~lv~vFGglT 65 (181) T PRK00259 1 MKQLLDFLPLILFFAAYKFYG---------------IYAATAALIVATVIQLAISWIRYRKVEKMQLISLVVVVVFGGLT 65 (181) T ss_pred CCHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 928999988999999999944---------------99999999999999999999990975377999999999999999 Q ss_pred HHHCCCCHHEEEHHHHHHHHHHHHHHHH-HHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 6618700424315599999999999999-828814899872037899799999889999999999999999999809558 Q gi|254780708|r 91 VWLRDESLIKMKPTFFYFVFSVVLFVGY-LSGKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTET 169 (204) Q Consensus 91 l~f~d~~FIk~KpTIi~~~fA~~Ll~~~-~~~k~llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~lN~~va~~~s~d~ 169 (204) ++||||+||||||||+|++||++|++|+ ++|||++|+++|+++++||++|+|||+||++||+++|++||||||++|||+ T Consensus 66 l~l~d~~FIk~KPTIi~~~fA~~Ll~~~~~~kk~llk~ll~~~~~l~~~~W~~Lt~~W~~fF~~la~lN~~v~~~~S~d~ 145 (181) T PRK00259 66 LVFHDDTFIKWKPTIIYWLFALALLGSQFIFKKPLIKRMLGKELTLPDPVWRKLNLAWALFFIFCGLLNLYVAFNFSTDT 145 (181) T ss_pred HHHCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 99378605774218999999999998898758859999987045899999999999999999999999999999779417 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 89999898999999999999999940788843369 Q gi|254780708|r 170 WIFFKAIGIFPIFLIFGIVQMNLINKHTILPEERK 204 (204) Q Consensus 170 WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~e~~k 204 (204) ||+||+||.+|++++|+++|.|+++||.++||++| T Consensus 146 WV~FK~fG~~~lt~~F~~~q~~~l~k~~~~~~~~~ 180 (181) T PRK00259 146 WVNFKVFGLTGLTLVFTLLQGPYLYRHLPEEDKNK 180 (181) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 66768999889999999999999986388645557 No 2 >COG2917 Intracellular septation protein A [Cell division and chromosome partitioning] Probab=100.00 E-value=0 Score=420.42 Aligned_cols=179 Identities=38% Similarity=0.720 Sum_probs=174.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999860110001232122221479999999999999999999850878876899999999999988 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLT 90 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglT 90 (204) |||++|++|+++||++|+.+| |+.||+++|+||++|++++|+.+||+++||++|++++++|||+| T Consensus 1 MK~~ld~~Pli~FF~~yk~~~---------------I~~AT~~livAt~i~l~~~w~~~rkv~km~l~s~~~v~vFG~lT 65 (180) T COG2917 1 MKQLLDFGPLILFFAAYKVYG---------------IYAATAVLIVATVIQLAILWIKYRKVEKMQLISGVVVVVFGGLT 65 (180) T ss_pred CCHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 916988878999999999987---------------99999999999999999999997423888898889999851478 Q ss_pred HHHCCCCHHEEEHHHHHHHHHHHHHHH-HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 661870042431559999999999999-9828814899872037899799999889999999999999999999809558 Q gi|254780708|r 91 VWLRDESLIKMKPTFFYFVFSVVLFVG-YLSGKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTET 169 (204) Q Consensus 91 l~f~d~~FIk~KpTIi~~~fA~~Ll~~-~~~~k~llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~lN~~va~~~s~d~ 169 (204) ++|||++||||||||+|++||++|++| .++|||++|+++|++++|||++|+|||+||++||++||++||||||++|+|+ T Consensus 66 l~f~~d~FIKwK~TIi~~lFa~~Llgs~~~~~k~lik~~lg~~l~Lp~~~W~~Ln~~W~~FFlf~ai~N~yV~~~~s~d~ 145 (180) T COG2917 66 LIFHNDTFIKWKPTIIYWLFALVLLGSQFLFKKPLIKRMLGKELQLPEEVWRKLNLRWALFFLFCAIANEYVARNFSTDT 145 (180) T ss_pred HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 85067516973099999999999998888716827999977441799899989989999999999999999997279762 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 89999898999999999999999940788843369 Q gi|254780708|r 170 WIFFKAIGIFPIFLIFGIVQMNLINKHTILPEERK 204 (204) Q Consensus 170 WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~e~~k 204 (204) |||||+||.+|+|++|++.|.||++||..++|+.| T Consensus 146 WV~FKvfG~~~ltlvF~l~q~~~i~rhl~~~~~~~ 180 (180) T COG2917 146 WVNFKVFGLTPLTLIFTLIQGPYIYRHLPKEDKNK 180 (180) T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 78740241419999999999899998557453579 No 3 >TIGR00997 ispZ intracellular septation protein A; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process .; GO: 0016021 integral to membrane. Probab=100.00 E-value=0 Score=416.80 Aligned_cols=182 Identities=31% Similarity=0.549 Sum_probs=172.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH Q ss_conf 999999999999999998601100012321222214799999999999999999998508-7887689999999999998 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFR-EFRVIPVVSGVCVLVFGSL 89 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~k-ki~~~~~is~~lv~vfGgl 89 (204) ||+++|++|+++||++|+.+|. ++. ..++.||.++|+|+++|++++|+++| |+||++++|.+++++|||+ T Consensus 1 mK~~~dl~Pli~FF~~Y~~~~g--------eGs-eh~~~AT~~l~va~~~~~~~~~~~~kf~v~k~~~~~~v~~~vFG~L 71 (187) T TIGR00997 1 MKLLLDLLPLIVFFATYKVTGG--------EGS-EHIFAATIALLVATIIAIILSYVKYKFKVEKMQWISFVLIVVFGGL 71 (187) T ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 9237888999999998852488--------731-8899999999999999999999996552031566677677656789 Q ss_pred HHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHCC--CHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 866187004243155999999999999998288--148998720378-99799999889999999999999999999809 Q gi|254780708|r 90 TVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGK--SFVRFFLSQVIC-LDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFS 166 (204) Q Consensus 90 Tl~f~d~~FIk~KpTIi~~~fA~~Ll~~~~~~k--~llk~ll~~~~~-l~~~~W~~Lt~~w~~fF~~la~lN~~va~~~s 166 (204) |++|||++||||||||+|++||.+|++|++.+| |.+|+++|+.++ |||++|++||++||+||++||++|||||+++| T Consensus 72 Tl~f~d~~fIk~K~TIIy~lFA~~L~~s~l~~kG~P~Ik~~lg~~~~Gl~~~~W~~Ln~~Wa~FF~~ma~lN~~v~~~~S 151 (187) T TIGR00997 72 TLVFHDSRFIKWKPTIIYALFAVILLGSQLFGKGKPLIKKMLGKEFQGLTEKVWAKLNFRWALFFIFMAVLNEYVATNFS 151 (187) T ss_pred HHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 98875886252323499999999999988861687578988778741789668677879999999999999999998668 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 55889999898999999999999999940788843 Q gi|254780708|r 167 TETWIFFKAIGIFPIFLIFGIVQMNLINKHTILPE 201 (204) Q Consensus 167 ~d~WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~e 201 (204) ||.|||||+||.+++|++|+++|.||++||.++|+ T Consensus 152 ~~~WV~FK~FG~~~lt~iF~~~~~~yl~~~~~~~~ 186 (187) T TIGR00997 152 EEIWVNFKVFGVTILTLIFILIQGIYLYRNMLKDD 186 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 53501343220099999999999999860378989 No 4 >pfam04279 IspA Intracellular septation protein A. Probab=100.00 E-value=0 Score=410.52 Aligned_cols=175 Identities=38% Similarity=0.732 Sum_probs=170.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999860110001232122221479999999999999999999850878876899999999999988 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLT 90 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglT 90 (204) ||+++|++|+++||++|+++| |+.||+++|+++++|++++|+.+||+|+||++|++++++|||+| T Consensus 1 mk~l~d~~Pli~Ffi~y~~~~---------------I~~AT~~l~~at~i~~~~~~~~~k~i~~~~~is~~lv~vfGglT 65 (176) T pfam04279 1 MKQLLDFGPLILFFVAYKYYG---------------IYVATAALIVATLLQLAILWILTGKVEKMQLITLVLVVVFGGLT 65 (176) T ss_pred CCHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 928999988999999999936---------------99999999999999999999990985377999999999999999 Q ss_pred HHHCCCCHHEEEHHHHHHHHHHHHHHHHH-HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH Q ss_conf 66187004243155999999999999998-28814899872037899799999889999999999999999999809558 Q gi|254780708|r 91 VWLRDESLIKMKPTFFYFVFSVVLFVGYL-SGKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTET 169 (204) Q Consensus 91 l~f~d~~FIk~KpTIi~~~fA~~Ll~~~~-~~k~llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~lN~~va~~~s~d~ 169 (204) ++||||+||||||||+||+||+++++|++ .|||++|+++|+++++||++|+|||++|++||+++|++||||||++|||+ T Consensus 66 l~~~d~~FIk~KPTIi~~~fA~~ll~s~~~~~k~llk~~l~~~~~l~~~~W~~Lt~~W~~fF~~~a~lN~~va~~~s~d~ 145 (176) T pfam04279 66 LWFHDDTFIKWKPTIIYWLFALALLGGLLFFKKPLLKRMLGKAIELPDEGWRKLNLRWALFFLFMAVLNEYVAFNFSTDT 145 (176) T ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99478503773189999999999998999668659999997246999999999999999999999999999999789044 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 8999989899999999999999994078884 Q gi|254780708|r 170 WIFFKAIGIFPIFLIFGIVQMNLINKHTILP 200 (204) Q Consensus 170 WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~ 200 (204) ||+||+||.++++++|+++|.++++||.++| T Consensus 146 WV~FK~fG~~~lt~iF~i~q~~~l~k~~~~~ 176 (176) T pfam04279 146 WVNFKVFGLMGLTLVFTLAQGPYLYKHLLEE 176 (176) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 3343699989999999999999998657899 No 5 >COG4648 Predicted membrane protein [Function unknown] Probab=98.31 E-value=0.00021 Score=44.12 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=97.1 Q ss_pred HHHHHHHHHHHHH------HHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC-CCCHHH---HHHHH Q ss_conf 6899999999999------9886618700424315599999999999999828814899872037-899799---99988 Q gi|254780708|r 75 IPVVSGVCVLVFG------SLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVI-CLDSIG---WRKLT 144 (204) Q Consensus 75 ~~~is~~lv~vfG------glTl~f~d~~FIk~KpTIi~~~fA~~Ll~~~~~~k~llk~ll~~~~-~l~~~~---W~~Lt 144 (204) .++++- ++.++| ......|.|.-..+-|-.+|..+..++.++++-|.++.+++---+- +||+++ =|..| T Consensus 60 l~ll~~-lwalag~alc~a~A~~~~~~e~~LylypV~vN~mml~vFG~tL~ag~t~verfArl~~p~LppkavRYTR~VT 138 (201) T COG4648 60 LQLLTQ-LWALAGIALCLAVASFMLKTEQLLYLYPVVVNAMMLAVFGGTLWAGMTIVERFARLQEPDLPPKAVRYTRHVT 138 (201) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 889999-9999999999766388863455663349999999999970547504079999998458999889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 999999999999999999980955889999898999999999999999940788843 Q gi|254780708|r 145 LRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMNLINKHTILPE 201 (204) Q Consensus 145 ~~w~~fF~~la~lN~~va~~~s~d~WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~e 201 (204) -.|++||+.+|.+...++.+-+.+.|-.|.-.---++....+++..-| ||-...|| T Consensus 139 qvWc~FFi~na~iaalla~~~~~~~Wa~yng~iay~L~g~lfvgE~a~-RrlVl~p~ 194 (201) T COG4648 139 QVWCGFFIINAGIAALLALYGDMSLWAAYNGMIAYLLMGTLFVGEWAY-RRLVLKPD 194 (201) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCC T ss_conf 999999999879999999955548999997189999965799999999-98616820 No 6 >pfam11361 DUF3159 Protein of unknown function (DUF3159). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed. Currently this family of proteins has no known function. Probab=97.28 E-value=0.012 Score=34.19 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=106.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHCC Q ss_conf 9999999999986011000123212222147999999999999999999985087887689999999-999998866187 Q gi|254780708|r 17 FSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCV-LVFGSLTVWLRD 95 (204) Q Consensus 17 ~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv-~vfGglTl~f~d 95 (204) -.|.++|..+|....+ +..|-.+.++...+.. .+-+-||-+..+.+++.+. .+-..+.....| T Consensus 11 ~lP~lvFvv~~~~~~~--------------L~~ai~~al~~a~~~~--v~RLvrr~~~~~a~~Gl~GV~i~a~~A~~tG~ 74 (188) T pfam11361 11 ALPGVVFVVAFTITAG--------------LTLAIIAAVAVAVLIL--VVRLVRRESVQPALSGLFGVGISAFIALRTGR 74 (188) T ss_pred CCCCEEEHHHHHHHCC--------------HHHHHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 5771220248875422--------------1999999999999999--99999468719999999999999999998588 Q ss_pred CCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0042431559999999999999982881489987203789979999----------988999999999999999999980 Q gi|254780708|r 96 ESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVICLDSIGWR----------KLTLRWAFFFLFLSFCNEIVWRNF 165 (204) Q Consensus 96 ~~FIk~KpTIi~~~fA~~Ll~~~~~~k~llk~ll~~~~~l~~~~W~----------~Lt~~w~~fF~~la~lN~~va~~~ 165 (204) ..=..+-.-+.|...+.++++|...++|++..+.+....-+ ..|+ +.|+.|+..|..=.......+..- T Consensus 75 A~dfFl~Gi~~n~~~~~v~l~SilvrwPl~G~v~g~~~g~~-~~Wr~d~~~~ray~~aT~~w~~~f~~R~~VQ~pLY~a~ 153 (188) T pfam11361 75 AKDFFLPGIWTNLAYAVVLLVSILVRWPLVGLVWGAVTGDG-TDWRRDRRAVRAYDLATLVWVAVFALRFVVQVPLYLAD 153 (188) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 85600899999999999999999983336999999990999-76025999999999999999999999999999887268 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95588999989899999999999999994078 Q gi|254780708|r 166 STETWIFFKAIGIFPIFLIFGIVQMNLINKHT 197 (204) Q Consensus 166 s~d~WV~FK~fG~~~l~~if~~~q~~~l~k~~ 197 (204) +.+.=..-|+.---|++.+-...+.-.++|-. T Consensus 154 ~~~~Lg~arl~mG~Pl~~~~~~~s~~~~rr~~ 185 (188) T pfam11361 154 QTGALGVARIAMGWPLTALALLVTWWAVRRAN 185 (188) T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCC T ss_conf 80499999999725899999999998622588 No 7 >cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole. Probab=65.51 E-value=9.4 Score=17.54 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHH Q ss_conf 9999889999999999999999999809558899----998989999999999 Q gi|254780708|r 139 GWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIF----FKAIGIFPIFLIFGI 187 (204) Q Consensus 139 ~W~~Lt~~w~~fF~~la~lN~~va~~~s~d~WV~----FK~fG~~~l~~if~~ 187 (204) .|.-....-++-++.+.++-.+.+|...+ .|.. -..-+.++..+.|.+ T Consensus 120 ~~~A~~iai~i~~~~L~~lg~~~~k~s~~-~~~~s~~~~~~~~~~~~~lv~~~ 171 (175) T cd02437 120 LWLAAGIAVAIVLAILFILGLVIGKISKI-NVAISFVWAVGMVITGISLVFSV 171 (175) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999999998155-13999999999999999999986 No 8 >PRK13741 conjugal transfer entry exclusion protein TraS; Provisional Probab=48.01 E-value=19 Score=15.81 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=20.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489987203789979999988999999999999999 Q gi|254780708|r 124 FVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNE 159 (204) Q Consensus 124 llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~lN~ 159 (204) ...+++.+.....+.+|.-+--.|.+|++++|+.|- T Consensus 47 ~~~~f~~~~~~~~~~~~sv~~~g~~gfii~~~it~~ 82 (171) T PRK13741 47 TYLRFLADKVDIADAGFSVLASGVLGFIIFVAITNG 82 (171) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999268509886189999789999999999975 No 9 >TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection .. Probab=45.69 E-value=21 Score=15.60 Aligned_cols=23 Identities=22% Similarity=0.671 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999985087 Q gi|254780708|r 49 VSTLLFMVLTAVSLGMFWFFFRE 71 (204) Q Consensus 49 ~AT~~li~at~i~~~~~~~~~kk 71 (204) +|+.||++.+++-+++.-|++|| T Consensus 278 IAAlVLi~L~V~LIiLYIWLYrR 300 (315) T TIGR01478 278 IAALVLIILTVVLIILYIWLYRR 300 (315) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998888564 No 10 >PRK01318 putative inner membrane protein translocase component YidC; Provisional Probab=43.59 E-value=22 Score=15.41 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHHCCCC Q ss_conf 999999999999940788 Q gi|254780708|r 181 IFLIFGIVQMNLINKHTI 198 (204) Q Consensus 181 l~~if~~~q~~~l~k~~~ 198 (204) .+-++.++|-.+++|+.. T Consensus 544 ~~~~~~~~qq~~~~~~~~ 561 (565) T PRK01318 544 VNNLLTIIQQYIINRRLE 561 (565) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999988634 No 11 >COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Probab=38.60 E-value=27 Score=14.95 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCH-HHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHH Q ss_conf 799999999999999999998508-7887-6899999999999988661870042431559999999999999982 Q gi|254780708|r 47 IFVSTLLFMVLTAVSLGMFWFFFR-EFRV-IPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLS 120 (204) Q Consensus 47 I~~AT~~li~at~i~~~~~~~~~k-ki~~-~~~is~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~~~~ 120 (204) ++.+..+++++.-+.+...-.+.. -.|+ ..-.-..++=.+.|+ |||+|+.||+..++..++ T Consensus 85 li~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgI-------------PSVVYG~fgl~vl~P~l~ 147 (310) T COG0573 85 LITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGI-------------PSVVYGFFGLFVLAPFLR 147 (310) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHHHHHH T ss_conf 999999999998788896888776358287888899999998169-------------711778999999999999 No 12 >pfam01169 UPF0016 Uncharacterized protein family UPF0016. This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Probab=37.55 E-value=28 Score=14.85 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHH Q ss_conf 799999999999999999998508788--76899999999999 Q gi|254780708|r 47 IFVSTLLFMVLTAVSLGMFWFFFREFR--VIPVVSGVCVLVFG 87 (204) Q Consensus 47 I~~AT~~li~at~i~~~~~~~~~kki~--~~~~is~~lv~vfG 87 (204) ..-++.++++.+.+++.......+++| .++++++++-++|| T Consensus 36 ~~G~~~al~~~~~lav~~G~~l~~~lp~~~i~~~a~~lFl~fG 78 (78) T pfam01169 36 FLGATLALLLATALAVLLGRWLATLLPPRVLHFVAGVLFLAFG 78 (78) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC T ss_conf 9989999999999999999999977899999999999999609 No 13 >COG3776 Predicted membrane protein [Function unknown] Probab=37.44 E-value=28 Score=14.84 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=48.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999860110001232122221479999999999999999999850878876899999999999988 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLT 90 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglT 90 (204) ||.++.++-+..-|.=-..-=+.+.+++... ...+++|++.+..--.+|+.+..-..++=...++.--.-|.+||-.. T Consensus 1 Mk~~l~lgkl~~l~vW~~lL~NL~~Pfp~pl--~~~l~va~~flvlmHglqllll~g~l~~~~p~~~lek~~IllFGVf~ 78 (91) T COG3776 1 MKMLLNLGKLLMLFVWLFLLLNLVHPFPRPL--NIFLNVALGFLVLMHGLQLLLLKGTLPKRGPQPWLEKLQILLFGVFE 78 (91) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9279989999999999999999737787138--89999999999999999999971647777997589999999999999 Q ss_pred HH Q ss_conf 66 Q gi|254780708|r 91 VW 92 (204) Q Consensus 91 l~ 92 (204) +. T Consensus 79 Ll 80 (91) T COG3776 79 LL 80 (91) T ss_pred HH T ss_conf 99 No 14 >TIGR01876 cas_Cas5d CRISPR-associated protein Cas5, Dvulg subtype; InterPro: IPR010155 CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.. Probab=34.71 E-value=6.6 Score=18.42 Aligned_cols=11 Identities=36% Similarity=0.615 Sum_probs=7.3 Q ss_pred HEEEHHHHHHH Q ss_conf 24315599999 Q gi|254780708|r 99 IKMKPTFFYFV 109 (204) Q Consensus 99 Ik~KpTIi~~~ 109 (204) |.|||||.|.+ T Consensus 39 IywKPti~~~i 49 (235) T TIGR01876 39 IYWKPTIRFVI 49 (235) T ss_pred EEECCEEEEEE T ss_conf 12156046787 No 15 >cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. Probab=34.68 E-value=31 Score=14.59 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=6.3 Q ss_pred HEEEHHHHHHHHHHHHH Q ss_conf 24315599999999999 Q gi|254780708|r 99 IKMKPTFFYFVFSVVLF 115 (204) Q Consensus 99 Ik~KpTIi~~~fA~~Ll 115 (204) ....|+.+-...|.+++ T Consensus 242 ~~~~~~~ia~~~a~~~~ 258 (416) T cd01118 242 LLIPPSFIAGVLALIFL 258 (416) T ss_pred HCCHHHHHHHHHHHHHH T ss_conf 23189999999999999 No 16 >KOG4609 consensus Probab=34.51 E-value=10 Score=17.34 Aligned_cols=25 Identities=20% Similarity=0.711 Sum_probs=21.7 Q ss_pred CCHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 8148998720378997999998899 Q gi|254780708|r 122 KSFVRFFLSQVICLDSIGWRKLTLR 146 (204) Q Consensus 122 k~llk~ll~~~~~l~~~~W~~Lt~~ 146 (204) -|.++++.-..+|.|.+||-|+|.. T Consensus 226 aNVIRY~icRALq~PpegWlR~nln 250 (284) T KOG4609 226 ANVIRYFICRALQFPPEGWLRMNLN 250 (284) T ss_pred CCHHHHHHHHHHCCCCCHHHEECCC T ss_conf 3222443334413794043121146 No 17 >PTZ00122 phosphoglycerate mutase; Provisional Probab=31.48 E-value=15 Score=16.40 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=34.3 Q ss_pred HHHCCCCHHEEEHHHHHHH--HHHHHHH--HHHH--------------CCCHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 6618700424315599999--9999999--9982--------------8814899872037899799999889 Q gi|254780708|r 91 VWLRDESLIKMKPTFFYFV--FSVVLFV--GYLS--------------GKSFVRFFLSQVICLDSIGWRKLTL 145 (204) Q Consensus 91 l~f~d~~FIk~KpTIi~~~--fA~~Ll~--~~~~--------------~k~llk~ll~~~~~l~~~~W~~Lt~ 145 (204) =+.-||----|||+.--.. -+-+=.. .++. .-|.++.+.-+.+|+|.++|-|++. T Consensus 189 Pi~P~Pp~~~wkp~~~~~~~D~aRIEaAFrkYFhRp~~~~DsyeiiVcHaNVIRYfvcRALQlPpeaWLR~sl 261 (296) T PTZ00122 189 PYAPDPSPRGSKFDIGEIVKDKKRINKAYETYFYKPGGSEDEYQLVICHGNVIRYFLCRALQYPLFAWLRFSS 261 (296) T ss_pred CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCHHHHEEECC T ss_conf 9899999777775446674360889999997613788888737999840278999999986188066245013 No 18 >pfam11457 DUF3021 Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins. Probab=30.72 E-value=36 Score=14.20 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHH Q ss_conf 99999999999988661870042431559999999999999 Q gi|254780708|r 77 VVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG 117 (204) Q Consensus 77 ~is~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~ 117 (204) +....+..++|..+..|++|.+=-.|-|+++.....+.... T Consensus 46 ~~~~lig~l~g~~S~IF~~e~wSl~~q~iiHF~~~~~~~~~ 86 (134) T pfam11457 46 LSVFLIGALFGLASLIFETERWSLLKQTLIHFILTLLTFLP 86 (134) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999224216999999999999999999 No 19 >COG2119 Predicted membrane protein [Function unknown] Probab=29.59 E-value=38 Score=14.09 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=54.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHCCCCHHEEEHH------HHHHHHHHHHHHHH Q ss_conf 799999999999999999998508788--7689999999999998866187004243155------99999999999999 Q gi|254780708|r 47 IFVSTLLFMVLTAVSLGMFWFFFREFR--VIPVVSGVCVLVFGSLTVWLRDESLIKMKPT------FFYFVFSVVLFVGY 118 (204) Q Consensus 47 I~~AT~~li~at~i~~~~~~~~~kki~--~~~~is~~lv~vfGglTl~f~d~~FIk~KpT------Ii~~~fA~~Ll~~~ 118 (204) ++.|+.+ -+..+.....+..--.| ...+.+.++=+.||.-.++=+.+ .+..+. ++--.|..+++ +- T Consensus 40 ~~~a~~~---m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~--~~~e~~~~~~~~~f~~tfi~~Fl-aE 113 (190) T COG2119 40 IAIALFA---MHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE--DDEEAQAASPRGVFVTTFITFFL-AE 113 (190) T ss_pred HHHHHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHHHH-HH T ss_conf 9999999---999999998887514844579999999999999998066221--31133445540489999999999-99 Q ss_pred HHCCC-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 82881-48998720378997999998899999999999999999998095 Q gi|254780708|r 119 LSGKS-FVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFST 167 (204) Q Consensus 119 ~~~k~-llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~lN~~va~~~s~ 167 (204) +..|+ +--..|+...+-+-..|---+....+-=..-...-.++++-.++ T Consensus 114 ~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~ 163 (190) T COG2119 114 LGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPE 163 (190) T ss_pred HCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 55388999999960379965661634899999988999977998711788 No 20 >PRK09584 tppB putative tripeptide transporter permease; Reviewed Probab=29.01 E-value=39 Score=14.03 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=84.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCH-----H---HHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 46515899999999999999999860110001232---122221-----4---799999999999999999998508788 Q gi|254780708|r 5 QSQSKIVCFLLEFSPGIAFWLCNFYGEKLFFYFPM---LSNLGG-----I---IFVSTLLFMVLTAVSLGMFWFFFREFR 73 (204) Q Consensus 5 ~~~~~~mK~lle~~Pli~FFi~y~~~~~~~~~~~~---~~~~~~-----~---I~~AT~~li~at~i~~~~~~~~~kki~ 73 (204) .++.++.-.+.=+.+.++|+..|.-.+.....+.. ..+..+ + -.-+-.+.+.+-+.+....+. .||.+ T Consensus 270 ~er~r~~~~~il~~~~ivFw~~y~Q~~ssl~lfa~~~vd~~l~g~~ip~~~fqslNpl~IiilaPl~a~lw~~l-g~~~~ 348 (500) T PRK09584 270 AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKM-GDTLP 348 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCC T ss_conf 99835899999999999999999983489999999833421277321789998872799999899999999981-77788 Q ss_pred HHHHHHHHHHH---HHHHHHH--HHCCCCHHEEEHHHHHHHHHHHHHH--H-HHHCCCHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 76899999999---9999886--6187004243155999999999999--9-9828814899872037899799999889 Q gi|254780708|r 74 VIPVVSGVCVL---VFGSLTV--WLRDESLIKMKPTFFYFVFSVVLFV--G-YLSGKSFVRFFLSQVICLDSIGWRKLTL 145 (204) Q Consensus 74 ~~~~is~~lv~---vfGglTl--~f~d~~FIk~KpTIi~~~fA~~Ll~--~-~~~~k~llk~ll~~~~~l~~~~W~~Lt~ 145 (204) ....++..+++ -|.-+.+ -+.|+.- |.++ +|+...-++. | .+..---+ +-.-++.++ +-.+. T Consensus 349 ~p~KfaiG~~l~gl~F~vl~~~~~~~~~~g---~vs~-~Wlv~~Y~l~tigEL~lSPvGL----S~vtklAP~--~~~s~ 418 (500) T PRK09584 349 MPHKFAIGMVLCSGAFLVLPLGAKFANDAG---IVSV-NWLIASYGLQSIGELMISGLGL----AMVAQLVPQ--RLMGF 418 (500) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCHH--HHHHH T ss_conf 369999999999999999999998626788---4068-9999999999999999758999----999987859--99999 Q ss_pred HHHHHHHHHHHHHHHHHH---HHC--HHHH---H-------HHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 999999999999999999---809--5588---9-------99989899-9999999999999940788843369 Q gi|254780708|r 146 RWAFFFLFLSFCNEIVWR---NFS--TETW---I-------FFKAIGIF-PIFLIFGIVQMNLINKHTILPEERK 204 (204) Q Consensus 146 ~w~~fF~~la~lN~~va~---~~s--~d~W---V-------~FK~fG~~-~l~~if~~~q~~~l~k~~~~~e~~k 204 (204) -.+++|+..|+.|....+ ..+ +|.. . -|...|.. ...-+....-.|.++|...+|+.|| T Consensus 419 mMG~wfls~a~gn~lag~ia~~~~~~~~~~~~~~~~~~y~~~F~~l~~~~~~~~v~l~~~~p~i~klm~~~~~~~ 493 (500) T PRK09584 419 IMGSWFLTTAGAALIAGYVAGLMAVPDNVTDPLMSLEVYGRVFMQIGIATAVIAVLMLLTAPKLHRMTQDDSADK 493 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 999999999999999999999861765555355566689899999999999999999999899999707887433 No 21 >pfam07444 Ycf66_N Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria. Probab=28.89 E-value=39 Score=14.02 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=47.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-- Q ss_conf 046515899999999999999999860110001232122221479999999999999999999850878876899999-- Q gi|254780708|r 4 SQSQSKIVCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGV-- 81 (204) Q Consensus 4 ~~~~~~~mK~lle~~Pli~FFi~y~~~~~~~~~~~~~~~~~~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~-- 81 (204) +..-+.++-..+-.+-+.++|......+ ..-+.|+++++..+..+.+. +...-|+++..+++-. T Consensus 4 ~~~pa~ilgi~l~~~~~~LY~~r~~~Pe---------vsRd~D~ffs~vGLl~g~IL-----~fqgwRLdPillfgQ~l~ 69 (84) T pfam07444 4 EFGPSTLLGIILAIAGIALYFLRTVKPE---------VSRDYDIFFASIGLLCGGIL-----IFQGWRLDPILLFGQVLL 69 (84) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHH-----HHHCCCCCHHHHHHHHHH T ss_conf 3478999999999999999999983923---------02341079999999999999-----983400174999999999 Q ss_pred --HHHHHHHHHHHH Q ss_conf --999999988661 Q gi|254780708|r 82 --CVLVFGSLTVWL 93 (204) Q Consensus 82 --lv~vfGglTl~f 93 (204) .++.||-=|+-+ T Consensus 70 ~~~~~~f~~etirL 83 (84) T pfam07444 70 TGTAIFFAWESIRL 83 (84) T ss_pred HHHHHHHHHHHEEC T ss_conf 99999999864034 No 22 >PRK05886 yajC preprotein translocase subunit YajC; Validated Probab=26.32 E-value=43 Score=13.75 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999986 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCNFY 29 (204) Q Consensus 11 mK~lle~~Pli~FFi~y~~ 29 (204) |..+.-|.|+++.|.++++ T Consensus 1 m~sl~~flPlili~~vf~f 19 (108) T PRK05886 1 MESLVLFLPFLLIMGGFMY 19 (108) T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9008999999999999999 No 23 >COG4270 Predicted membrane protein [Function unknown] Probab=23.89 E-value=48 Score=13.48 Aligned_cols=106 Identities=13% Similarity=0.214 Sum_probs=63.1 Q ss_pred HHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--H Q ss_conf 99999999988661870042431559999999999999982881489987203789979999988999999999999--9 Q gi|254780708|r 80 GVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSF--C 157 (204) Q Consensus 80 ~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~~~~~k~llk~ll~~~~~l~~~~W~~Lt~~w~~fF~~la~--l 157 (204) ..+-...+|++-+.+.|.|-.+-|.-+-+-+++++..|-+ |.+.|-.+-.|. |++ .-+|+++-+.+|+ + T Consensus 13 la~~f~~iGi~HF~r~eqf~~IVPp~vP~p~tav~VSG~f------EilgglaLlip~--~s~-~aa~gl~~l~laVfPA 83 (131) T COG4270 13 LAAAFLLIGIGHFTRPEQFRRIVPPCVPLPKTAVLVSGIF------EILGGLALLIPA--PSQ-AAAWGLIILLLAVFPA 83 (131) T ss_pred HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCC--CHH-HHHHHHHHHHHHHCCH T ss_conf 9999999722311565653245899888604688997899------997046442478--279-8870499999997103 Q ss_pred HHHHHHHH------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999980------955889999898999999999999999940788843 Q gi|254780708|r 158 NEIVWRNF------STETWIFFKAIGIFPIFLIFGIVQMNLINKHTILPE 201 (204) Q Consensus 158 N~~va~~~------s~d~WV~FK~fG~~~l~~if~~~q~~~l~k~~~~~e 201 (204) |+|.|+.- +-..|.-.- -.++..+.+. +.+|+..++. T Consensus 84 NiYMa~h~lP~~~~~~p~~ll~a---RLplQavL~g----la~~l~R~~~ 126 (131) T COG4270 84 NIYMAQHKLPDGDKPLPPWLLAA---RLPLQAVLLG----LAYKLARDEA 126 (131) T ss_pred HHHHHHHCCCCCCCCCCHHHHHH---HCCHHHHHHH----HHHHHHCCCC T ss_conf 78888612876789897899999---7427999999----9999805246 No 24 >cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i Probab=23.72 E-value=49 Score=13.46 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 79999988999999999999999999 Q gi|254780708|r 137 SIGWRKLTLRWAFFFLFLSFCNEIVW 162 (204) Q Consensus 137 ~~~W~~Lt~~w~~fF~~la~lN~~va 162 (204) .+-|+++|+.-++--+.++.+|-|.- T Consensus 13 s~lWkkis~~va~P~i~l~~~n~y~~ 38 (86) T cd00925 13 SELWKKISFYVALPAVALCMLNAYLK 38 (86) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999989999899999999999760 No 25 >PHA00736 hypothetical protein Probab=23.51 E-value=49 Score=13.44 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHH Q ss_conf 9999999999999850878876899999999999988661870042431559999999999999 Q gi|254780708|r 54 FMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG 117 (204) Q Consensus 54 li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~ 117 (204) .++..+..++..|-..+|+|... +-+-...++.|-|-.=+.|--|++..+.|...++| T Consensus 18 aviiil~mmgltykmagkipai~------~giastf~lmfmdflplfwgi~vifgliaglvlgg 75 (79) T PHA00736 18 AVIIILSMMGLTYKMAGKIPAII------TGIASTFVLMFMDFLPLFWGITVIFGLIAGLVLGG 75 (79) T ss_pred HHHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999758999806661899------98999999999999899999999999998884068 Done!