Query gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 118 out of 525
Neff 5.6
Searched_HMMs 33803
Date Wed Jun 1 14:41:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780708.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1v54_G Cytochrome C oxidase p 17.5 58 0.0017 12.7 3.2 26 136-161 12-37 (85)
2 >2npi_C Protein PCF11; CLP1-PC 15.5 29 0.00087 14.4 -0.6 10 165-174 31-40 (110)
3 >2a5y_B CED-4; apoptosis; HET: 12.6 38 0.0011 13.7 -0.6 17 11-27 62-78 (103)
4 >2cly_A ATP synthase B chain, 9.5 71 0.0021 12.2 -0.2 52 77-128 30-82 (214)
5 >3h9v_A P2X purinoceptor; puri 8.5 1.1E+02 0.0033 11.1 2.3 15 102-116 29-43 (74)
6 >3chx_B PMOA; membrane protein 7.3 1.3E+02 0.0037 10.7 0.8 30 168-197 144-173 (252)
7 >3bwx_A Alpha/beta hydrolase; 7.0 1.3E+02 0.0039 10.6 3.1 24 124-147 11-35 (58)
8 >2p62_A Hypothetical protein P 6.0 1.3E+02 0.0038 10.7 -0.1 41 88-128 135-176 (241)
9 >2dkl_A Trinucleotide repeat c 5.9 1.5E+02 0.0044 10.3 1.2 11 8-18 22-32 (85)
10 >1yew_B Particulate methane mo 5.4 1.6E+02 0.0047 10.1 2.3 53 148-200 28-86 (162)
No 1
>>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (G:)
Probab=17.50 E-value=58 Score=12.68 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97999998899999999999999999
Q gi|254780708|r 136 DSIGWRKLTLRWAFFFLFLSFCNEIV 161 (204)
Q Consensus 136 ~~~~W~~Lt~~w~~fF~~la~lN~~v 161 (204)
...-|+++|+.-++--+.++.+|.|.
T Consensus 12 ~~~~Wk~is~~va~P~i~l~~~n~~~ 37 (85)
T 1v54_G 12 GARTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899888989999999999999985
No 2
>>2npi_C Protein PCF11; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} (C:)
Probab=15.46 E-value=29 Score=14.36 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=5.8
Q ss_pred HCHHHHHHHH
Q ss_conf 0955889999
Q gi|254780708|r 165 FSTETWIFFK 174 (204)
Q Consensus 165 ~s~d~WV~FK 174 (204)
+++..||.||
T Consensus 31 LdD~qWV~Fk 40 (110)
T 2npi_C 31 LSDSQWAAFK 40 (110)
T ss_dssp CCHHHHHHCC
T ss_pred ECCHHHHCCC
T ss_conf 4416752144
No 3
>>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} (B:1-103)
Probab=12.61 E-value=38 Score=13.68 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780708|r 11 VCFLLEFSPGIAFWLCN 27 (204)
Q Consensus 11 mK~lle~~Pli~FFi~y 27 (204)
.|+..|++|+|.||--|
T Consensus 62 RrqAs~L~PLI~fFe~~ 78 (103)
T 2a5y_B 62 RRQASELGPLIDFFNYN 78 (103)
T ss_dssp HHHCSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 97642368899998610
No 4
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=9.48 E-value=71 Score=12.17 Aligned_cols=52 Identities=25% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHH-HHHCCCHHHHH
Q ss_conf 99999999999988661870042431559999999999999-98288148998
Q gi|254780708|r 77 VVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG-YLSGKSFVRFF 128 (204)
Q Consensus 77 ~is~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~-~~~~k~llk~l 128 (204)
-+++..+..+|..+.....+.++.=--+++-..|.+++... .+.++++-+.+
T Consensus 30 g~~~~~~~~~~~~~~l~Skei~v~n~e~~~~i~F~i~~~l~~k~~~~~i~~~l 82 (214)
T 2cly_A 30 GVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFA 82 (214)
T ss_dssp -------------------------------------------------CHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87422899999999997785306880799999999999999999899999999
No 5
>>3h9v_A P2X purinoceptor; purinergic receptor, ION channel, closed state, APO state, ION transport, ionic channel, receptor, transmembrane, transport; HET: NAG; 3.10A {Danio rerio} PDB: 3i5d_A* (A:1-27,A:310-356)
Probab=8.50 E-value=1.1e+02 Score=11.05 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=8.6
Q ss_pred EHHHHHHHHHHHHHH
Q ss_conf 155999999999999
Q gi|254780708|r 102 KPTFFYFVFSVVLFV 116 (204)
Q Consensus 102 KpTIi~~~fA~~Ll~ 116 (204)
=||++|..-|+++++
T Consensus 29 IPTiINiGSGlAllG 43 (74)
T 3h9v_A 29 IPTLLNIGAGLALLG 43 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHH
T ss_conf 025778988889888
No 6
>>3chx_B PMOA; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium} (B:)
Probab=7.27 E-value=1.3e+02 Score=10.72 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 588999989899999999999999994078
Q gi|254780708|r 168 ETWIFFKAIGIFPIFLIFGIVQMNLINKHT 197 (204)
Q Consensus 168 d~WV~FK~fG~~~l~~if~~~q~~~l~k~~ 197 (204)
..|+-=-++|-.+.-++|.-.+-|.+..+.
T Consensus 144 ~s~~~TaivG~~~~gLlFYP~NWpi~ap~H 173 (252)
T 3chx_B 144 GSYVITAVVGSLGWGLLFYPNNWPAIAALH 173 (252)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred CCEEEEEEECCHHHHEEECCCCCCEEECCC
T ss_conf 663211000334131143688751650467
No 7
>>3bwx_A Alpha/beta hydrolase; YP_496220.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Novosphingobium aromaticivorans DSM12444} (A:151-208)
Probab=6.99 E-value=1.3e+02 Score=10.64 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHH
Q ss_conf 48998720378-9979999988999
Q gi|254780708|r 124 FVRFFLSQVIC-LDSIGWRKLTLRW 147 (204)
Q Consensus 124 llk~ll~~~~~-l~~~~W~~Lt~~w 147 (204)
.++.+-+...+ ++++.|++++.+-
T Consensus 11 ~lr~i~~~fgP~lt~~qW~~~a~~~ 35 (58)
T 3bwx_A 11 ALQESSGDVYPDWDITQWLRYAKRI 35 (58)
T ss_dssp HHHHHHTTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9997521122102278888876543
No 8
>>2p62_A Hypothetical protein PH0156; structural genomics, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii OT3} (A:)
Probab=5.97 E-value=1.3e+02 Score=10.65 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHC-CCHHHHH
Q ss_conf 9886618700424315599999999999999828-8148998
Q gi|254780708|r 88 SLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSG-KSFVRFF 128 (204)
Q Consensus 88 glTl~f~d~~FIk~KpTIi~~~fA~~Ll~~~~~~-k~llk~l 128 (204)
|+..++.|+.++.||||+=-....++=.-|.+-+ ++-++.+
T Consensus 135 ~IG~~~~~~p~~~~K~~vE~lm~~l~k~eg~leK~~~si~~L 176 (241)
T 2p62_A 135 GMGNLTLNEPFVKEKKELELSLAYLAKLDGILEKYRGSMRAL 176 (241)
T ss_dssp EECCSCCCCTTBCCCCSHHHHHHHHHHHTTHHHHCSHHHHHH
T ss_pred EECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 632534577146633439999999997652799988799999
No 9
>>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=5.92 E-value=1.5e+02 Score=10.30 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 15899999999
Q gi|254780708|r 8 SKIVCFLLEFS 18 (204)
Q Consensus 8 ~~~mK~lle~~ 18 (204)
|++.|||.|+|
T Consensus 22 n~~~KQl~dMG 32 (85)
T 2dkl_A 22 SRLIKQLTDMG 32 (85)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 19999988568
No 10
>>1yew_B Particulate methane monooxygenase, A subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} (B:1-162)
Probab=5.44 E-value=1.6e+02 Score=10.13 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCH-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999998095-5889999-----89899999999999999994078884
Q gi|254780708|r 148 AFFFLFLSFCNEIVWRNFST-ETWIFFK-----AIGIFPIFLIFGIVQMNLINKHTILP 200 (204)
Q Consensus 148 ~~fF~~la~lN~~va~~~s~-d~WV~FK-----~fG~~~l~~if~~~q~~~l~k~~~~~ 200 (204)
++|++.+|.-..-.-.+-.+ |+|+..| .-..++..+-|-.+.-.++-.+-..|
T Consensus 28 ~~f~~~~g~~hih~mL~~GDWDFW~DWKDRr~W~tV~PI~~itfpaavq~~lW~~~RlP 86 (162)
T 1yew_B 28 VVFFVIVGSYHIHAMLTMGDWDFWSDWKDRRLWVTVTPIVLVTFPAAVQSYLWERYRLP 86 (162)
T ss_dssp HHHHHHHHHHHHHHHHSCSCSSSCGGGCCTTHHHHHHHHHHSHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC
T ss_conf 99999999999999985368511122652465641226377863899999999870378
Done!