Query gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 118 out of 525
Neff 5.6
Searched_HMMs 23785
Date Tue May 31 16:14:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780708.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_G Cytochrome C oxidase po 16.6 43 0.0018 12.5 3.2 25 136-160 12-36 (85)
2 3chx_B PMOA; membrane protein, 14.3 43 0.0018 12.5 0.8 29 169-197 145-173 (252)
3 1yew_B Particulate methane mon 9.0 74 0.0031 11.2 2.3 24 3-26 9-32 (247)
4 2cly_A ATP synthase B chain, m 7.8 73 0.0031 11.2 0.1 51 78-128 31-82 (214)
5 1fft_C Ubiquinol oxidase; elec 7.3 89 0.0037 10.7 1.4 81 14-94 34-116 (204)
6 2xl1_A Arginine attenuator pep 6.2 1E+02 0.0043 10.4 0.6 16 129-144 8-23 (26)
7 2dkl_A Trinucleotide repeat co 4.2 1.5E+02 0.0063 9.4 1.2 11 8-18 22-32 (85)
8 3bz1_M PSII-M, photosystem II 4.2 1.5E+02 0.0063 9.4 3.1 24 48-71 8-31 (36)
9 2ksd_A Aerobic respiration con 3.9 1.6E+02 0.0069 9.2 3.7 41 47-90 25-65 (115)
10 2rdd_B UPF0092 membrane protei 3.7 1.8E+02 0.0074 9.0 2.2 13 17-29 6-18 (37)
No 1
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 2occ_G* 1oco_G* 1occ_G* 1ocz_G* ...
Probab=16.58 E-value=43 Score=12.55 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9799999889999999999999999
Q gi|254780708|r 136 DSIGWRKLTLRWAFFFLFLSFCNEI 160 (204)
Q Consensus 136 ~~~~W~~Lt~~w~~fF~~la~lN~~ 160 (204)
..+-|+++|+.-++--+.++.+|-|
T Consensus 12 ~~~~Wk~is~~vaiP~v~l~~~n~y 36 (85)
T 1v54_G 12 GARTWRFLTFGLALPSVALCTLNSW 36 (85)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5777888798999999999999998
No 2
>3chx_B PMOA; membrane protein, copper, methane, beta barrel; 3.90A {Methylosinus trichosporium}
Probab=14.26 E-value=43 Score=12.52 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88999989899999999999999994078
Q gi|254780708|r 169 TWIFFKAIGIFPIFLIFGIVQMNLINKHT 197 (204)
Q Consensus 169 ~WV~FK~fG~~~l~~if~~~q~~~l~k~~ 197 (204)
.|+-=-+.|-.+.-++|.-.+-|.+..+.
T Consensus 145 s~~iTAivGg~~wgLlFYP~NWpiiap~H 173 (252)
T 3chx_B 145 SYVITAVVGSLGWGLLFYPNNWPAIAALH 173 (252)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred CEEEEECCCCHHHEEEECCCCCCEECCCC
T ss_conf 55654114652010044677653454779
No 3
>1yew_B Particulate methane monooxygenase, A subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=9.00 E-value=74 Score=11.17 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 504651589999999999999999
Q gi|254780708|r 3 RSQSQSKIVCFLLEFSPGIAFWLC 26 (204)
Q Consensus 3 ~~~~~~~~mK~lle~~Pli~FFi~ 26 (204)
||+.|..-+.-.+|+.-+.+.|.+
T Consensus 9 ~~~~ea~~~~r~~d~~~~~~~f~~ 32 (247)
T 1yew_B 9 RSHAEAVQVSRTIDWMALFVVFFV 32 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHEEEEHHHHHHHHHHH
T ss_conf 182766513210168999999999
No 4
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=7.78 E-value=73 Score=11.20 Aligned_cols=51 Identities=25% Similarity=0.137 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHH-HHHCCCHHHHH
Q ss_conf 9999999999988661870042431559999999999999-98288148998
Q gi|254780708|r 78 VSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG-YLSGKSFVRFF 128 (204)
Q Consensus 78 is~~lv~vfGglTl~f~d~~FIk~KpTIi~~~fA~~Ll~~-~~~~k~llk~l 128 (204)
.|+--++.+|.+|.+...+.|+.=--+.+-..|.+.++.. ..+|+++-+.+
T Consensus 31 ~tgpy~~~~gl~~~l~skei~v~~~ef~~~lsflif~~~~~k~~g~~i~~~L 82 (214)
T 2cly_A 31 VTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFA 82 (214)
T ss_dssp ------------------------------------------------CHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7521899999999997786048874999999999999999999889999999
No 5
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=7.27 E-value=89 Score=10.72 Aligned_cols=81 Identities=7% Similarity=-0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999860110001232122-22-14799999999999999999998508788768999999999999886
Q gi|254780708|r 14 LLEFSPGIAFWLCNFYGEKLFFYFPMLSN-LG-GIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLTV 91 (204)
Q Consensus 14 lle~~Pli~FFi~y~~~~~~~~~~~~~~~-~~-~~I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglTl 91 (204)
..|..=-..+|.+|...+......+.... .. ......|.+++.++..........+++=.+.......+.+++|..-+
T Consensus 34 ~SE~m~F~~lf~ay~~~~~~~~~~~~~~~~~~~~~~~~~T~lLl~SS~~~~~a~~a~~~~~~~~~~~~L~~t~~lG~~Fl 113 (204)
T 1fft_C 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI 113 (204)
T ss_dssp HHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999967688986102013108999999999999999999999984788889999999999999998
Q ss_pred HHC
Q ss_conf 618
Q gi|254780708|r 92 WLR 94 (204)
Q Consensus 92 ~f~ 94 (204)
.+|
T Consensus 114 ~~q 116 (204)
T 1fft_C 114 GME 116 (204)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 889
No 6
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=6.17 E-value=1e+02 Score=10.39 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=9.7
Q ss_pred HHCCCCCCHHHHHHHH
Q ss_conf 7203789979999988
Q gi|254780708|r 129 LSQVICLDSIGWRKLT 144 (204)
Q Consensus 129 l~~~~~l~~~~W~~Lt 144 (204)
+.++--++|+-|+-||
T Consensus 8 ftsqdylsdhlwraln 23 (26)
T 2xl1_A 8 FTSQDYLSDHLWRALN 23 (26)
T ss_pred EECHHHHHHHHHHHHH
T ss_conf 0107788899999871
No 7
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=4.25 E-value=1.5e+02 Score=9.43 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 15899999999
Q gi|254780708|r 8 SKIVCFLLEFS 18 (204)
Q Consensus 8 ~~~mK~lle~~ 18 (204)
|++.||+.|++
T Consensus 22 n~~~KQfsnMG 32 (85)
T 2dkl_A 22 SRLIKQLTDMG 32 (85)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 38999987468
No 8
>3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3kzi_M* 3a0b_M* 3a0h_M*
Probab=4.24 E-value=1.5e+02 Score=9.43 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999985087
Q gi|254780708|r 48 FVSTLLFMVLTAVSLGMFWFFFRE 71 (204)
Q Consensus 48 ~~AT~~li~at~i~~~~~~~~~kk 71 (204)
++||+.++..-.+-+.+.|+.+..
T Consensus 8 ~iAt~LFilvPt~FLlILyvqT~s 31 (36)
T 3bz1_M 8 LIATALFVLVPSVFLIILYVQTES 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHEEEECC
T ss_conf 999999999988887653144133
No 9
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=3.94 E-value=1.6e+02 Score=9.20 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999850878876899999999999988
Q gi|254780708|r 47 IFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLT 90 (204)
Q Consensus 47 I~~AT~~li~at~i~~~~~~~~~kki~~~~~is~~lv~vfGglT 90 (204)
+..+....+.|.++|+.+++...++++...... .++||.++
T Consensus 25 lL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~r---si~Fgll~ 65 (115)
T 2ksd_A 25 MLLALALVVLAIVVQMAVTMVLHGQVESIDVIR---SIFFGLLI 65 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCS---TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHH---HHHHHHHH
T ss_conf 999999999999999978751016511999999---99999999
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=3.71 E-value=1.8e+02 Score=9.02 Aligned_cols=13 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999986
Q gi|254780708|r 17 FSPGIAFWLCNFY 29 (204)
Q Consensus 17 ~~Pli~FFi~y~~ 29 (204)
+.|++++|+..|+
T Consensus 6 l~~~v~~f~ifYF 18 (37)
T 2rdd_B 6 ILMLVVFGLIFYF 18 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
Done!