Query gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 118 out of 525 Neff 5.6 Searched_HMMs 13730 Date Wed Jun 1 07:40:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780708.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1v54g_ f.23.2.1 (G:) Mitochon 23.2 17 0.0013 13.4 3.2 25 136-160 12-36 (84) 2 d2a5yb2 a.77.1.3 (B:1-108) Cel 12.4 16 0.0012 13.6 -0.6 17 11-27 62-78 (108) 3 d1p16a2 d.142.2.3 (A:1-245) mR 10.2 23 0.0017 12.7 -0.4 10 95-104 236-245 (245) 4 d1fftc_ f.25.1.1 (C:) Cytochro 4.0 92 0.0067 9.3 1.4 17 136-152 162-178 (185) 5 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 96 0.007 9.2 3.5 23 48-70 8-30 (36) 6 d2a65a1 f.54.1.1 (A:5-513) Na( 3.8 97 0.0071 9.1 11.8 96 60-155 356-458 (509) 7 d2dkla1 a.5.2.1 (A:8-79) Trinu 3.6 1.1E+02 0.0077 8.9 1.2 11 8-18 15-25 (72) 8 d2e74g1 f.23.26.1 (G:9-35) Pet 3.5 1.1E+02 0.0079 8.9 1.4 11 22-32 13-23 (27) 9 d1dj8a_ a.57.1.1 (A:) Protein 3.3 1.2E+02 0.0084 8.7 1.4 11 102-112 21-31 (79) 10 d2cchb2 a.74.1.1 (B:309-432) C 3.3 1.2E+02 0.0085 8.7 1.4 46 91-138 31-77 (124) No 1 >d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]} Probab=23.18 E-value=17 Score=13.40 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=18.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9799999889999999999999999 Q gi|254780708|r 136 DSIGWRKLTLRWAFFFLFLSFCNEI 160 (204) Q Consensus 136 ~~~~W~~Lt~~w~~fF~~la~lN~~ 160 (204) ..+-|+++|+.-++--+.++.+|-| T Consensus 12 ~~~lWkkis~~va~P~i~l~~~n~~ 36 (84) T d1v54g_ 12 GARTWRFLTFGLALPSVALCTLNSW 36 (84) T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9899998898999999999999997 No 2 >d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]} Probab=12.41 E-value=16 Score=13.63 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780708|r 11 VCFLLEFSPGIAFWLCN 27 (204) Q Consensus 11 mK~lle~~Pli~FFi~y 27 (204) .|+..|++|+|.||--| T Consensus 62 RrqAs~L~PLI~fFe~~ 78 (108) T d2a5yb2 62 RRQASELGPLIDFFNYN 78 (108) T ss_dssp HHHCSSSHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 98776551799999983 No 3 >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Probab=10.21 E-value=23 Score=12.74 Aligned_cols=10 Identities=50% Similarity=0.943 Sum_probs=5.2 Q ss_pred CCCHHEEEHH Q ss_conf 7004243155 Q gi|254780708|r 95 DESLIKMKPT 104 (204) Q Consensus 95 d~~FIk~KpT 104 (204) +...+||||+ T Consensus 236 ~~~~lKWKP~ 245 (245) T d1p16a2 236 DQTLLKWKPA 245 (245) T ss_dssp EEEEEEECCG T ss_pred CCCEEEECCC T ss_conf 8880895979 No 4 >d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]} Probab=4.02 E-value=92 Score=9.26 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=11.2 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 97999998899999999 Q gi|254780708|r 136 DSIGWRKLTLRWAFFFL 152 (204) Q Consensus 136 ~~~~W~~Lt~~w~~fF~ 152 (204) ..--|+-+..-|..-|. T Consensus 162 ~~~YWHFvd~vWi~lf~ 178 (185) T d1fftc_ 162 LSLFWHFLDVVWICVFT 178 (185) T ss_dssp HHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 5 >d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]} Probab=3.89 E-value=96 Score=9.16 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999998508 Q gi|254780708|r 48 FVSTLLFMVLTAVSLGMFWFFFR 70 (204) Q Consensus 48 ~~AT~~li~at~i~~~~~~~~~k 70 (204) ++||+.++..-.+-+.+.|+.+. T Consensus 8 ~iAt~LFilvPt~FLliLyvqT~ 30 (36) T d2axtm1 8 LIATALFVLVPSVFLIILYVQTE 30 (36) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHEEEC T ss_conf 99999999998999887512304 No 6 >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Probab=3.84 E-value=97 Score=9.13 Aligned_cols=96 Identities=7% Similarity=0.009 Sum_probs=41.8 Q ss_pred HHHHHHHHHCC-CCCH--HHHHHHHHHHHHHHHHHHHCCCCHHE--EEHH--HHHHHHHHHHHHHHHHCCCHHHHHHHCC Q ss_conf 99999998508-7887--68999999999999886618700424--3155--9999999999999982881489987203 Q gi|254780708|r 60 VSLGMFWFFFR-EFRV--IPVVSGVCVLVFGSLTVWLRDESLIK--MKPT--FFYFVFSVVLFVGYLSGKSFVRFFLSQV 132 (204) Q Consensus 60 i~~~~~~~~~k-ki~~--~~~is~~lv~vfGglTl~f~d~~FIk--~KpT--Ii~~~fA~~Ll~~~~~~k~llk~ll~~~ 132 (204) +...++.+.++ +.++ ...++.+.+.+.+++....++..... +=.+ +.-..+...+.+++..|.+-+..-.... T Consensus 356 ~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~ 435 (509) T d2a65a1 356 MQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRG 435 (509) T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTT T ss_pred CCCHHHHHHHHCCCCHHHHHHHEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHC T ss_conf 33044898986498636035230678872524788735318889999999999999999986022375389999999847 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 78997999998899999999999 Q gi|254780708|r 133 ICLDSIGWRKLTLRWAFFFLFLS 155 (204) Q Consensus 133 ~~l~~~~W~~Lt~~w~~fF~~la 155 (204) ...+...|-+..+++..=.+... T Consensus 436 ~~~~~~~~~~~~~~~i~Pi~l~~ 458 (509) T d2a65a1 436 GIIKVPRIYYYVMRYITPAFLAV 458 (509) T ss_dssp CSSCCCTHHHHHHHTHHHHHHHH T ss_pred CCCCHHHHHHHHEEEEEHHHHHH T ss_conf 89877899987403423853635 No 7 >d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]} Probab=3.61 E-value=1.1e+02 Score=8.94 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=6.9 Q ss_pred HHHHHHHHHHH Q ss_conf 15899999999 Q gi|254780708|r 8 SKIVCFLLEFS 18 (204) Q Consensus 8 ~~~mK~lle~~ 18 (204) |++.||+.++| T Consensus 15 np~~KQfsnMG 25 (72) T d2dkla1 15 SRLIKQLTDMG 25 (72) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHCC T ss_conf 58999876368 No 8 >d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=3.52 E-value=1.1e+02 Score=8.85 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=0.0 Q ss_pred HHHHHHHHHCC Q ss_conf 99999986011 Q gi|254780708|r 22 AFWLCNFYGEK 32 (204) Q Consensus 22 ~FFi~y~~~~~ 32 (204) +|+.+|+-+++ T Consensus 13 lf~aayqqykr 23 (27) T d2e74g1 13 LFYAAYQQYKR 23 (27) T ss_dssp HHHHHHHHTTS T ss_pred HHHHHHHHHCC T ss_conf 99999998548 No 9 >d1dj8a_ a.57.1.1 (A:) Protein HNS-dependent expression A; HdeA {Escherichia coli [TaxId: 562]} Probab=3.35 E-value=1.2e+02 Score=8.70 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=0.0 Q ss_pred EHHHHHHHHHH Q ss_conf 15599999999 Q gi|254780708|r 102 KPTFFYFVFSV 112 (204) Q Consensus 102 KpTIi~~~fA~ 112 (204) |||.++|.-+. T Consensus 21 kP~av~~Aeg~ 31 (79) T d1dj8a_ 21 QPTAVGFAEAL 31 (79) T ss_dssp HHHHHHHHHHH T ss_pred CCCEEHHHHHH T ss_conf 75112188876 No 10 >d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Probab=3.31 E-value=1.2e+02 Score=8.67 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=0.0 Q ss_pred HHHCC-CCHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHH Q ss_conf 66187-0042431559999999999999982881489987203789979 Q gi|254780708|r 91 VWLRD-ESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVICLDSI 138 (204) Q Consensus 91 l~f~d-~~FIk~KpTIi~~~fA~~Ll~~~~~~k~llk~ll~~~~~l~~~ 138 (204) +-+.| +.|++.+|+.+ +-|++.+.-...+++..-..+.+.-..+++ T Consensus 31 lsLl~~~~~l~~~PS~l--Aaaai~lar~~l~~~~W~~~L~~~t~y~~~ 77 (124) T d2cchb2 31 LSLIDADPYLKYLPSVI--AGAAFHLALYTVTGQSWPESLIRKTGYTLE 77 (124) T ss_dssp HHHHCHHHHTTSCHHHH--HHHHHHHHHHHHHSCCSCHHHHHHHCCCHH T ss_pred HHHHHHHHHHCCCHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHCCCHH T ss_conf 99981999974694899--999999999982789855899988099999 Done!