RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
(204 letters)
>gnl|CDD|146751 pfam04279, IspA, Intracellular septation protein A.
Length = 176
Score = 137 bits (347), Expect = 2e-33
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 13 FLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREF 72
LL+F P I F++ Y I+V+T +V T + L + W +
Sbjct: 3 QLLDFGPLILFFVAYKYYG---------------IYVATAALIVATLLQLAILWILTGKV 47
Query: 73 RVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG-YLSGKSFVRFFLSQ 131
+ +++ V V+VFG LT+W D++ IK KPT Y++F++ L G K ++ L +
Sbjct: 48 EKMQLITLVLVVVFGGLTLWFHDDTFIKWKPTIIYWLFALALLGGLLFFKKPLLKRMLGK 107
Query: 132 VICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMN 191
I L GWRKL LRWA FFLF++ NE V NFST+TW+ FK G+ + L+F + Q
Sbjct: 108 AIELPDEGWRKLNLRWALFFLFMAVLNEYVAFNFSTDTWVNFKVFGLMGLTLVFTLAQGP 167
Query: 192 LINKH 196
+ KH
Sbjct: 168 YLYKH 172
>gnl|CDD|32741 COG2917, COG2917, Intracellular septation protein A [Cell division
and chromosome partitioning].
Length = 180
Score = 116 bits (292), Expect = 4e-27
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 13 FLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREF 72
LL+F P I F+ I+ +T + +V T + L + W +R+
Sbjct: 3 QLLDFGPLILFFAAYKVYG---------------IYAATAVLIVATVIQLAILWIKYRKV 47
Query: 73 RVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFV-GYLSGKSFVRFFLSQ 131
+ ++SGV V+VFG LT+ +++ IK KPT Y++F++VL +L K ++ L +
Sbjct: 48 EKMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLGSQFLFKKPLIKRMLGK 107
Query: 132 VICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMN 191
+ L WRKL LRWA FFLF + NE V RNFST+TW+ FK G+ P+ LIF ++Q
Sbjct: 108 ELQLPEEVWRKLNLRWALFFLFCAIANEYVARNFSTDTWVNFKVFGLTPLTLIFTLIQGP 167
Query: 192 LINKH 196
I +H
Sbjct: 168 YIYRH 172
>gnl|CDD|144808 pfam01350, Flavi_NS4A, Flavivirus non-structural protein NS4A.
Flaviviruses encode a single polyprotein. This is
cleaved into three structural and seven non-structural
proteins. The NS4A protein is small and poorly conserved
among the Flaviviruses. NS4A contains multiple
hydrophobic potential membrane spanning regions. NS4A
has only been found in cells infected by Kunjin virus.
Length = 145
Score = 28.3 bits (64), Expect = 1.5
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 48 FVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDESLIKMKPT-FF 106
+ LL +L +LG+F + + G+ VL+ +W+ K+
Sbjct: 49 LETILLVALLGLATLGVFLLLMARKGIGRMGLGMVVLLVAGGLLWMGGVPPGKIAGVLLI 108
Query: 107 YFVFSVVL 114
+F+ VVL
Sbjct: 109 FFLLLVVL 116
>gnl|CDD|34371 COG4757, COG4757, Predicted alpha/beta hydrolase [General
function prediction only].
Length = 281
Score = 26.5 bits (58), Expect = 4.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 56 VLTAVSLGMFWFFFREFRVIPVVSGVCVLVF 86
++ A + G+ +F+R F +G VL F
Sbjct: 33 LVVAGATGVGQYFYRRFAAAAAKAGFEVLTF 63
>gnl|CDD|112547 pfam03737, Methyltransf_6, Demethylmenaquinone methyltransferase.
Members of this family are demethylmenaquinone
methyltransferases that convert dimethylmenaquinone
(DMK) to menaquinone (MK) in the final step of
menaquinone biosynthesis. This region is also found at
the C-terminus of the DlpA protein.
Length = 154
Score = 26.5 bits (59), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 25 LCNFYGEKLFFYFPMLSNLGG 45
LC+ YG ++ P+LSN GG
Sbjct: 8 LCDAYGSQVGVVEPILSNFGG 28
>gnl|CDD|36500 KOG1286, KOG1286, KOG1286, Amino acid transporters [Amino acid
transport and metabolism].
Length = 554
Score = 26.4 bits (58), Expect = 5.1
Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 37 FPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDE 96
+LS+L ++ + + L L +F + R +P+V+ + +FG+L
Sbjct: 330 IGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSL 389
Query: 97 SLIKMKPTFFYFVFSVVLFVGYLSGKSFVRF---FLSQVICLDSIGWRKLTLRW------ 147
+ LF L S +RF Q LD + ++ T +
Sbjct: 390 GAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGL 449
Query: 148 --AFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQM 190
L F W FF+A PI LIF I
Sbjct: 450 LVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYK 494
>gnl|CDD|111042 pfam02101, Ocular_alb, Ocular albinism type 1 protein.
Length = 407
Score = 26.2 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 21 IAFWLCNFYGEKLFFYFPMLSNLGG 45
IA WL N E L FY M ++ G
Sbjct: 254 IACWLSNIINESLLFYLEMQPDIHG 278
>gnl|CDD|39021 KOG3817, KOG3817, KOG3817, Uncharacterized conserved protein
[Function unknown].
Length = 452
Score = 25.7 bits (56), Expect = 8.5
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 83 VLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVICLDSIGWRK 142
LVF + + F+Y S + +G L+ V F +++ ++ +
Sbjct: 140 FLVFVVGILLFFSARRLSRNSVFYY---SSGIVIGILASLLVVIFLVARFFPKKTMMYGI 196
Query: 143 LTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMNLINKHTILPEE 202
L W+ + + N WI ++ + LI G++ + K +
Sbjct: 197 LIGGWSISLYVIKQ----LADNLQ-LIWIEYR-DYVLGYVLIVGLISFAVCYKIGPPKDP 250
Query: 203 R 203
R
Sbjct: 251 R 251
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.338 0.149 0.499
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,829,686
Number of extensions: 169377
Number of successful extensions: 1315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 275
Length of query: 204
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,340,536
Effective search space: 499161640
Effective search space used: 499161640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 55 (25.1 bits)