RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>gnl|CDD|178950 PRK00259, PRK00259, intracellular septation protein A; Reviewed.
          Length = 179

 Score =  136 bits (345), Expect = 4e-33
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 18/193 (9%)

Query: 13  FLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREF 72
            LL+F P I F          F  + +       I+ +T   +V T + L + W  +R+ 
Sbjct: 3   QLLDFLPLILF----------FAAYKL-----YGIYAATAALIVATVIQLAISWIRYRKV 47

Query: 73  RVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVG-YLSGKSFVRFFLSQ 131
             + ++S V V+VFG LT+   D++ IK KPT  Y++F++ L    ++  K  ++  L +
Sbjct: 48  EKMQLISLVVVVVFGGLTLVFHDDTFIKWKPTIIYWLFALALLGSQFIFKKPLIKRMLGK 107

Query: 132 VICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMN 191
            + L    WRKL L WA FF+F    N  V RNFST+TW+ FK  G+  + L+F ++Q  
Sbjct: 108 ELTLPDPVWRKLNLAWALFFIFCGLLNLYVARNFSTDTWVNFKVFGLTGLTLVFTLLQGP 167

Query: 192 LINKHTILPEERK 204
            + +H  LPEE K
Sbjct: 168 YLYRH--LPEEDK 178


>gnl|CDD|130070 TIGR00997, ispZ, intracellular septation protein A.  This partially
           characterized protein, whose absence can cause a cell
           division defect in an intracellularly replicating
           bacterium, is found only so far only in the
           Proteobacteria.
          Length = 178

 Score =  103 bits (258), Expect = 5e-23
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 16/185 (8%)

Query: 13  FLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAVSLGMFWFFFREF 72
             L+  P I F+                      IF +T+  +V T +++G+ +  +++ 
Sbjct: 3   LALDLLPLIVFFATYKMTG---------------IFAATIALLVATIIAIGLSYVKYKKV 47

Query: 73  RVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGK-SFVRFFLSQ 131
             +  +S V ++VFG LT+   D   IK KPT  Y +F+V+L    L GK   +++ L +
Sbjct: 48  EKMQWISFVLIVVFGGLTLIFHDSRFIKWKPTIIYGLFAVILLGSQLFGKTPGIKYMLGK 107

Query: 132 VICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFPIFLIFGIVQMN 191
              L   GW KL  RWA FF+F++  NE V  NFS E W+ FK  G+  +  IF I Q  
Sbjct: 108 EFQLTEKGWLKLNFRWAGFFIFMAVLNEYVATNFSEEIWVNFKVFGVTILTFIFIIAQGP 167

Query: 192 LINKH 196
            + ++
Sbjct: 168 YLYRN 172


>gnl|CDD|178535 PLN02949, PLN02949, transferase, transferring glycosyl groups.
          Length = 463

 Score = 27.0 bits (60), Expect = 3.7
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 86  FGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLSGKSFVRFFLSQVIC 134
            GS  V+L  E+L K  P +F+         GY       R F  +V+C
Sbjct: 125 LGS--VYLAWEALCKFTPLYFFDT------SGYAFTYPLARLFGCKVVC 165


>gnl|CDD|177916 PLN02277, PLN02277, H(+) -translocating inorganic pyrophosphatase.
          Length = 730

 Score = 25.5 bits (56), Expect = 9.5
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 12/37 (32%)

Query: 104 TFFYFVFSV------------VLFVGYLSGKSFVRFF 128
             FY    V            +L VGY  G SFV  F
Sbjct: 155 ATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALF 191


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.149    0.499 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,434,267
Number of extensions: 223566
Number of successful extensions: 1163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 145
Length of query: 204
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,071,361
Effective search space: 468206515
Effective search space used: 468206515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 55 (25.0 bits)