RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>d1q5xa_ c.8.7.1 (A:) Regulator of RNase E activity RraA (MenG)
          {Escherichia coli [TaxId: 562]}
          Length = 160

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 25 LCNFYGEKLFFYFPMLSNLGGI 46
          LC+ Y E +    P+ SN GG 
Sbjct: 7  LCDIYQEDVNVVEPLFSNFGGR 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.338    0.149    0.499 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,333
Number of extensions: 36861
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 24
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (24.1 bits)