BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780708|ref|YP_003065121.1| intracellular septation
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 204

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MSRSQSQSKIVCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAV 60
           MSRSQSQSKIVCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAV
Sbjct: 1   MSRSQSQSKIVCFLLEFSPGIAFWLCNFYGEKLFFYFPMLSNLGGIIFVSTLLFMVLTAV 60

Query: 61  SLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLS 120
           SLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLS
Sbjct: 61  SLGMFWFFFREFRVIPVVSGVCVLVFGSLTVWLRDESLIKMKPTFFYFVFSVVLFVGYLS 120

Query: 121 GKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFP 180
           GKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFP
Sbjct: 121 GKSFVRFFLSQVICLDSIGWRKLTLRWAFFFLFLSFCNEIVWRNFSTETWIFFKAIGIFP 180

Query: 181 IFLIFGIVQMNLINKHTILPEERK 204
           IFLIFGIVQMNLINKHTILPEERK
Sbjct: 181 IFLIFGIVQMNLINKHTILPEERK 204


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 26.2 bits (56), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 69  FREFRVIPVVSGVC---VLVFGSLTVWLRDES 97
           F+ FRV+P  +G+C    L +   +VW ++E+
Sbjct: 170 FKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score = 22.7 bits (47), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 161 VWRNFSTETWIFFKAIGIFPIFLIFGIVQMNLINKH--TILPE 201
           +WR   T   +FF  I    +F++F   +    NK   TIL E
Sbjct: 210 LWREEVTLEVVFFSIISALLLFILFSYYRQAKKNKENDTILLE 252


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.338    0.149    0.499 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,282
Number of Sequences: 1233
Number of extensions: 5875
Number of successful extensions: 30
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 14
length of query: 204
length of database: 328,796
effective HSP length: 70
effective length of query: 134
effective length of database: 242,486
effective search space: 32493124
effective search space used: 32493124
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 36 (18.5 bits)