HHsearch alignment for GI: 254780709 and conserved domain: COG0486

Probab=96.87  E-value=0.0017  Score=44.85  Aligned_cols=174  Identities=16%  Similarity=0.231  Sum_probs=91.5

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             99998785201001210001366741231135444442478999999985226742677434512456889999975303
Q gi|254780709|r   87 DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS  166 (321)
Q Consensus        87 ~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~  166 (321)
T Consensus       196 ~~~~~l~~ll~~~~~g~il---r~G~kvvIiG~PNvGKSSLLNaL----~~--~d~AIVT-------------------d  247 (454)
T COG0486         196 ELIAELDELLATAKQGKIL---REGLKVVIIGRPNVGKSSLLNAL----LG--RDRAIVT-------------------D  247 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HCCCEEEEECCCCCCHHHHHHHH----HC--CCCEEEC-------------------C
T ss_conf             9999999999744421366---45864999879988679999988----66--7866742-------------------8


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH
Q ss_conf             5321223586612454228999-965148759986543-33211577899998998763022234301123102335225
Q gi|254780709|r  167 ADFVCSEIGSDAAALAYEAFKQ-AQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN  244 (321)
Q Consensus       167 v~~~~~~~~~dp~~v~~~a~~~-a~~~~~DvvliDTAG-R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~  244 (321)
T Consensus       248 I------~GT-----TRDviee~i~i~G~pv~l~DTAGiRet~d~V---E~iGIeRs~~~i~--~ADlvL~v~D~~~~~~  311 (454)
T COG0486         248 I------AGT-----TRDVIEEDINLNGIPVRLVDTAGIRETDDVV---ERIGIERAKKAIE--EADLVLFVLDASQPLD  311 (454)
T ss_pred             C------CCC-----CCCEEEEEEEECCEEEEEEECCCCCCCCCHH---HHHHHHHHHHHHH--HCCEEEEEEECCCCCC
T ss_conf             9------997-----4103789999898899998567766673489---9999999999998--5998999970887776


Q ss_pred             HHHHHHHHHHHCCC---CEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCHHHHHH
Q ss_conf             77899987643589---76999654578706-9999999997698899975--89813255577899999
Q gi|254780709|r  245 ALRQVEMFHAVAGT---TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV--GEGINDLEPFVAKDFSA  308 (321)
Q Consensus       245 ~~~~a~~F~~~~~~---~g~I~TKlD~ta~~-G~~ls~~~~~~~Pi~fig~--Ge~i~Dl~~f~~~~~~~  308 (321)
T Consensus       312 ~~d~~--~~~~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         312 KEDLA--LIELLPKKKPIIVVLNKADLVSKIELESE--KLANGDAIISISAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             HHHHH--HHHHCCCCCCEEEEEECHHCCCCCCCCHH--HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             01177--88724368977999960211564321012--02678826999825765799999999999863