HHsearch alignment for GI: 254780709 and conserved domain: COG0552

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=100.00  E-value=0  Score=690.21  Aligned_cols=310  Identities=44%  Similarity=0.757  Sum_probs=286.8

Q ss_pred             CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCC
Q ss_conf             100593541489999999999999999999986056---77899999999999997388989999999999987-51278
Q gi|254780709|r    3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS---RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKD   78 (321)
Q Consensus         3 ~~~~~~e~m~~f~kLk~gL~kt~~~L~~~l~~l~~~---~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~-~~~~~   78 (321)
T Consensus        23 ~~~~~~~~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~  102 (340)
T COG0552          23 EEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK  102 (340)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             11143210007999988999999999998766301234430048899999999997024699999999999987510236


Q ss_pred             C-CHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf             9-9899999999987852010012---10001366741231135444442478999999985226742677434512456
Q gi|254780709|r   79 V-SVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA  154 (321)
Q Consensus        79 i-~~~~i~~~l~~~L~~~L~~~~~---~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA  154 (321)
T Consensus       103 ~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA  182 (340)
T COG0552         103 IKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA  182 (340)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             89889999999999999846554444365523589867999993488863717999999999789869998233478999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             88999997530353212235866124542289999651487599865433321157789999899876302223430112
Q gi|254780709|r  155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL  234 (321)
Q Consensus       155 ~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~  234 (321)
T Consensus       183 iEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~l  262 (340)
T COG0552         183 IEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEIL  262 (340)
T ss_pred             HHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             99999999995992782599998089999999999976999999967554457366899999999984645689984289


Q ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             310233522577899987643589769996545787069999999997698899975898132555778999998728
Q gi|254780709|r  235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG  312 (321)
Q Consensus       235 lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG  312 (321)
T Consensus       263 lvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~  340 (340)
T COG0552         263 LVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG  340 (340)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf             997756475689999999875288669997024677762435088886999799857888443200699999998609