HHsearch alignment for GI: 254780709 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=690.21 Aligned_cols=310 Identities=44% Similarity=0.757 Sum_probs=286.8
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCC
Q ss_conf 100593541489999999999999999999986056---77899999999999997388989999999999987-51278
Q gi|254780709|r 3 NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS---RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKD 78 (321)
Q Consensus 3 ~~~~~~e~m~~f~kLk~gL~kt~~~L~~~l~~l~~~---~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~-~~~~~ 78 (321)
T Consensus 23 ~~~~~~~~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~ 102 (340)
T COG0552 23 EEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK 102 (340)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 11143210007999988999999999998766301234430048899999999997024699999999999987510236
Q ss_pred C-CHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 9-9899999999987852010012---10001366741231135444442478999999985226742677434512456
Q gi|254780709|r 79 V-SVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154 (321)
Q Consensus 79 i-~~~~i~~~l~~~L~~~L~~~~~---~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA 154 (321)
T Consensus 103 ~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 103 IKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 89889999999999999846554444365523589867999993488863717999999999789869998233478999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 88999997530353212235866124542289999651487599865433321157789999899876302223430112
Q gi|254780709|r 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234 (321)
Q Consensus 155 ~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~ 234 (321)
T Consensus 183 iEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~l 262 (340)
T COG0552 183 IEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEIL 262 (340)
T ss_pred HHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999995992782599998089999999999976999999967554457366899999999984645689984289
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 310233522577899987643589769996545787069999999997698899975898132555778999998728
Q gi|254780709|r 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312 (321)
Q Consensus 235 lVlda~~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG 312 (321)
T Consensus 263 lvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 263 LVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf 997756475689999999875288669997024677762435088886999799857888443200699999998609