HHsearch alignment for GI: 254780709 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.90 E-value=0.018 Score=37.69 Aligned_cols=90 Identities=24% Similarity=0.434 Sum_probs=67.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 4123113544444247899999998522674267743451245688999997530353212--23586612454228999
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAFKQ 188 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~v~~~a~~~ 188 (321)
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE----S~~QiklRA~RL~~~~~~l~l~aEt~~e----~I~~~ 163 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE----SLQQIKLRADRLGLPTNNLYLLAETNLE----DIIAE 163 (456)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC----CHHHHHHHHHHHCCCCCCEEEEHHCCHH----HHHHH
T ss_conf 61799736898779899999999987059-579996776----7899999999828996455774112899----99999
Q ss_pred HHHHCCCEEEEECCCCCCCHH
Q ss_conf 965148759986543332115
Q gi|254780709|r 189 AQAKKVDVLIIDTAGRLHNNS 209 (321)
Q Consensus 189 a~~~~~DvvliDTAGR~~~~~ 209 (321)
T Consensus 164 l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 164 LEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred HHHCCCCEEEEECCCEECCCC
T ss_conf 985499789996541230263