HHsearch alignment for GI: 254780709 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.90  E-value=0.018  Score=37.69  Aligned_cols=90  Identities=24%  Similarity=0.434  Sum_probs=67.0

Q ss_pred             CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf             4123113544444247899999998522674267743451245688999997530353212--23586612454228999
Q gi|254780709|r  111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAFKQ  188 (321)
Q Consensus       111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~v~~~a~~~  188 (321)
T Consensus        93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE----S~~QiklRA~RL~~~~~~l~l~aEt~~e----~I~~~  163 (456)
T COG1066          93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE----SLQQIKLRADRLGLPTNNLYLLAETNLE----DIIAE  163 (456)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC----CHHHHHHHHHHHCCCCCCEEEEHHCCHH----HHHHH
T ss_conf             61799736898779899999999987059-579996776----7899999999828996455774112899----99999


Q ss_pred             HHHHCCCEEEEECCCCCCCHH
Q ss_conf             965148759986543332115
Q gi|254780709|r  189 AQAKKVDVLIIDTAGRLHNNS  209 (321)
Q Consensus       189 a~~~~~DvvliDTAGR~~~~~  209 (321)
T Consensus       164 l~~~~p~lvVIDSIQT~~s~~  184 (456)
T COG1066         164 LEQEKPDLVVIDSIQTLYSEE  184 (456)
T ss_pred             HHHCCCCEEEEECCCEECCCC
T ss_conf             985499789996541230263