HHsearch alignment for GI: 254780709 and conserved domain: COG3854

Probab=96.06  E-value=0.016  Score=38.10  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             311354444424789999999852-----2674267743451245688999--997530353212235866124542289
Q gi|254780709|r  114 ILVVGVNGVGKTTVIGKLSKKMSD-----AGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAF  186 (321)
Q Consensus       114 il~vG~nG~GKTTT~aKLA~~~~~-----~g~kV~lva~DtfR~aA~eQL~--~~a~~~~v~~~~~~~~~dp~~v~~~a~  186 (321)
T Consensus       140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dV--------ld~cpk~-~gm  210 (308)
T COG3854         140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDV--------LDPCPKA-EGM  210 (308)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHH--------CCCCHHH-HHH
T ss_conf             6996599887077999999986315112677328997150043034358860323221010--------4656178-889


Q ss_pred             HHH-HHHCCCEEEEECCCCC
Q ss_conf             999-6514875998654333
Q gi|254780709|r  187 KQA-QAKKVDVLIIDTAGRL  205 (321)
Q Consensus       187 ~~a-~~~~~DvvliDTAGR~  205 (321)
T Consensus       211 mmaIrsm~PEViIvDEIGt~  230 (308)
T COG3854         211 MMAIRSMSPEVIIVDEIGTE  230 (308)
T ss_pred             HHHHHHCCCCEEEEECCCCH
T ss_conf             99999549957998343647