HHsearch alignment for GI: 254780709 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.08 E-value=0.13 Score=31.71 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=73.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41231135444442478999999985226742677434512456889999975303532122358661245422899996
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 127 RGLviiVGaTGSGKSTtmAaMi~yRN~-~s~gHIiTIE-------DPIEfih~h~~CIvTQREvGvDTes-w~~AlkNtl 197 (375)
T COG5008 127 RGLVIIVGATGSGKSTTMAAMIGYRNK-NSTGHIITIE-------DPIEFIHKHKRCIVTQREVGVDTES-WEVALKNTL 197 (375)
T ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCC-CCCCCEEEEC-------CHHHHHHCCCCEEEEEEEECCCHHH-HHHHHHHHH
T ss_conf 745999877888840168998601346-8877358823-------8199874156415873341446188-999999877
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----------CCCC
Q ss_conf 51487599865433321157789999899876302223430112310233522577899987643-----------5897
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTT 259 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-----------~~~~ 259 (321)
T Consensus 198 RQaPDvI~IGEv-R---sretMeyA------i~f--AeTGHLcmaTLHAN~anQaleRIinffP~Err~Qll~DlsLNLk 265 (375)
T COG5008 198 RQAPDVILIGEV-R---SRETMEYA------IQF--AETGHLCMATLHANNANQALERIINFFPEERREQLLIDLSLNLK 265 (375)
T ss_pred HCCCCEEEEEEC-C---CHHHHHHH------HHH--HHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 518986999730-4---37679999------988--73286589985057715789999863968776436777554578
Q ss_pred EEEEE----CCCCCCCHH
Q ss_conf 69996----545787069
Q gi|254780709|r 260 GLIMT----KMDGTARGG 273 (321)
Q Consensus 260 g~I~T----KlD~ta~~G 273 (321)
T Consensus 266 giIaQrL~p~~~gkgR~~ 283 (375)
T COG5008 266 GIIAQRLVPRKDGKGRTA 283 (375)
T ss_pred HHHHHHHCCCCCCCCCEE
T ss_conf 998876133899986415