HHsearch alignment for GI: 254780709 and conserved domain: PRK00741
>PRK00741 prfC peptide chain release factor 3; Provisional.
Probab=96.06 E-value=0.0074 Score=40.37 Aligned_cols=137 Identities=22% Similarity=0.278 Sum_probs=73.0
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHH---HCCCCE------EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 741231135444442478999999985---226742------67743451245688999997530353212235866124
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKV------MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~---~~g~kV------~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
T Consensus 9 ~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G-~V~~~~~~~~~~sD~~---~~E~~------RgiSI~--------ss 70 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG-TVKGRKSGRHATSDWM---EMEKQ------RGISVT--------SS 70 (526)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-EEECCCCCCCCCCCCC---HHHHH------CCCEEE--------CC
T ss_conf 117799993789898999999997467524484-6631467886467885---88997------596486--------15
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHH
Q ss_conf 5422899996514875998654333211577899998998763022234301123102335225-----77899987643
Q gi|254780709|r 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHAV 255 (321)
Q Consensus 181 v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~-----~~~~a~~F~~~ 255 (321)
T Consensus 71 v~-----~~e~~~~~iNliDTPG--h~DF--~~e~---~raL~a-----~D~Av~Vida~~GVe~qTe~~w~~~~~---- 129 (526)
T PRK00741 71 VM-----QFPYRDCLINLLDTPG--HEDF--SEDT---YRTLTA-----VDSALMVIDAAKGVEPQTRKLMEVCRL---- 129 (526)
T ss_pred EE-----EEEECCEEEEEEECCC--CHHH--HHHH---HHHHHH-----HCEEEEEEECCCCCCHHHHHHHHHHHH----
T ss_conf 17-----7867898999990989--4677--8999---999987-----375999997775523336899999886----
Q ss_pred CCCCEE-EEECCCC-CCCHHHHH-HHHHHHCCC
Q ss_conf 589769-9965457-87069999-999997698
Q gi|254780709|r 256 AGTTGL-IMTKMDG-TARGGGLI-PIVVTHKIP 285 (321)
Q Consensus 256 ~~~~g~-I~TKlD~-ta~~G~~l-s~~~~~~~P 285 (321)
T Consensus 130 ~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg~~ 162 (526)
T PRK00741 130 RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 399889999656767898789887788874787