HHsearch alignment for GI: 254780709 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=100.00 E-value=0 Score=647.54 Aligned_cols=285 Identities=32% Similarity=0.527 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC----C-HHHHHHHHHH
Q ss_conf 9999999999999986056778999----99999999997388989999999999987512789----9-8999999999
Q gi|254780709|r 20 GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----S-VQRVLYDVSE 90 (321)
Q Consensus 20 gL~kt~~~L~~~l~~l~~~~~lde~----~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i----~-~~~i~~~l~~ 90 (321)
T Consensus 2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~ 81 (433)
T PRK00771 2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE 81 (433)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76889899999999861899889999999999999999965678799999999999997146245789989999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 87852010012100013667412311354444424789999999852267426774345124568899999753035321
Q gi|254780709|r 91 LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170 (321)
Q Consensus 91 ~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~ 170 (321)
T Consensus 82 eL~~llg~~~~-----~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 82 ELVKLLGEEAE-----ILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHCCCCC-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99998496765-----6689858999737889789999999999997799467850678836899999999986388731
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 22358661245422899996514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 171 ~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~------P~e~llV~Da~~GQ~a~~~a~ 228 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITK------PDEVILVIDATIGQQASEQAK 228 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHC------CCEEEEEEECCCCHHHHHHHH
T ss_conf 78899999999999999845--6988999776521040999999999987757------976899865442267899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8764358976999654578706999999999769889997589813255577899999872865646
Q gi|254780709|r 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317 (321)
Q Consensus 251 ~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i~Dl~~f~~~~~~~~llG~gd~~ 317 (321)
T Consensus 229 ~F~~~~~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~ 295 (433)
T PRK00771 229 AFKEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLK 295 (433)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 9987538873799725678873054218988789956886178721488668088999870898589