HHsearch alignment for GI: 254780709 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=97.29 E-value=0.0061 Score=40.95 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=48.0
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 12311354444424789999999852267426-77434512456889999975303532122358661245422899996
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~-lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~ 190 (321)
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~~~I~~~i~~~~~~~s-l-------------~------- 96 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTKDVIERVAGEASTSGS-L-------------F------- 96 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHHHHHHHHCCC-C-------------C-------
T ss_conf 469988939987999999999984---998599771011478999999998760688-7-------------7-------
Q ss_pred HHCCCEEEEECCCCCCCH--HHHHHHHHHHH
Q ss_conf 514875998654333211--57789999899
Q gi|254780709|r 191 AKKVDVLIIDTAGRLHNN--SILMAGIGKMI 219 (321)
Q Consensus 191 ~~~~DvvliDTAGR~~~~--~~lm~EL~ki~ 219 (321)
T Consensus 97 ~~~~KlIIlDEvD~l~~~~d~gg~~al~~~i 127 (403)
T PRK04195 97 GAKRKLILLDEVDGIHGNADRGGVRAILEII 127 (403)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 8873499963434457244479999999998