HHsearch alignment for GI: 254780709 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=97.29  E-value=0.0061  Score=40.95  Aligned_cols=84  Identities=25%  Similarity=0.414  Sum_probs=48.0

Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             12311354444424789999999852267426-77434512456889999975303532122358661245422899996
Q gi|254780709|r  112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ  190 (321)
Q Consensus       112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~-lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~  190 (321)
T Consensus        41 k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~~~I~~~i~~~~~~~s-l-------------~-------   96 (403)
T PRK04195         41 KALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTKDVIERVAGEASTSGS-L-------------F-------   96 (403)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHHHHHHHHCCC-C-------------C-------
T ss_conf             469988939987999999999984---998599771011478999999998760688-7-------------7-------


Q ss_pred             HHCCCEEEEECCCCCCCH--HHHHHHHHHHH
Q ss_conf             514875998654333211--57789999899
Q gi|254780709|r  191 AKKVDVLIIDTAGRLHNN--SILMAGIGKMI  219 (321)
Q Consensus       191 ~~~~DvvliDTAGR~~~~--~~lm~EL~ki~  219 (321)
T Consensus        97 ~~~~KlIIlDEvD~l~~~~d~gg~~al~~~i  127 (403)
T PRK04195         97 GAKRKLILLDEVDGIHGNADRGGVRAILEII  127 (403)
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             8873499963434457244479999999998