HHsearch alignment for GI: 254780709 and conserved domain: PRK05595
>PRK05595 replicative DNA helicase; Provisional.
Probab=96.56 E-value=0.085 Score=32.94 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEE--------------------CCCCCHHH-----HHHHHHHHHH
Q ss_conf 41231135444442478999999985-2267426774--------------------34512456-----8899999753
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA--------------------GDTFRSAA-----IDQLKIWADR 164 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~kV~lva--------------------~DtfR~aA-----~eQL~~~a~~ 164 (321)
T Consensus 201 GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~~~~~~~~a~~~ 280 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77799985798980799999999999866993799958899999999999964698844232689799999999999999
Q ss_pred H-CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0-3532122358-6612454228999965148759986543332---1157789999899876302223
Q gi|254780709|r 165 T-SADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPH 228 (321)
Q Consensus 165 ~-~v~~~~~~~~-~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~---~~~~lm~EL~ki~~v~~~~~~~ 228 (321)
T Consensus 281 l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~~~~~r~~ev~~isr~LK~lAke 349 (444)
T PRK05595 281 LAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGKSSESRQQEVSEISRSIKALAKE 349 (444)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 854897054899964899999999999873999899823763578988888999999999999999999