HHsearch alignment for GI: 254780709 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=96.60 E-value=0.016 Score=38.06 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=68.1
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC-CCCC---CCHHHHH
Q ss_conf 66741231135444442478999999985226742677434512456889999975303532122-3586---6124542
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS---DAAALAY 183 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~-~~~~---dp~~v~~ 183 (321)
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p-----~~~~~---------i~~~~HPD~~~i~pe~k~~~~~Id~iR 81 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSP-----EAQYK---------ISQKIHPDIHEFFPEGKGRLHSIETPR 81 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CHHHH---------HHHCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 9966068768999865999999999998578996-----16889---------874689985996157778878678999
Q ss_pred HHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2899996----51487599865433321157789999899876302223430112310233522577899987643589
Q gi|254780709|r 184 EAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258 (321)
Q Consensus 184 ~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~~~~ 258 (321)
T Consensus 82 ~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~Aa--NAL-------LKtLEEPP~~tvfILit~~~~~lLpTI~SRCQ~I~i 151 (290)
T PRK05917 82 AIKKQIWIHPYEANYKIYIIHEADRMTLDAI--SAF-------LKVLEDPPKHSVIILTSAKPQRLPPTIRSRSLSIHI 151 (290)
T ss_pred HHHHHHCCCCCCCCCEEEEECCHHHHCHHHH--HHH-------HHHHCCCCCCEEEEEEECCHHHCCHHHHHCCCEEEC
T ss_conf 9999964186468826999756776389999--999-------997347987859999869925482377633511677