HHsearch alignment for GI: 254780709 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=97.91 E-value=5.9e-05 Score=55.11 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=60.5
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---------HHCC-CCCCCC---CCC
Q ss_conf 741231135444442478999999985226742677434512456889999975---------3035-321223---586
Q gi|254780709|r 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---------RTSA-DFVCSE---IGS 176 (321)
Q Consensus 110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---------~~~v-~~~~~~---~~~ 176 (321)
T Consensus 31 ~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L~i~~~~~~~~~~~~~ 110 (241)
T PRK06067 31 FGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYLRIFPLNTEGFEWNSE 110 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCHH
T ss_conf 99089998079988799999999999867982999994289999999999839985999866970578324111342155
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 612454228999965148759986543
Q gi|254780709|r 177 DAAALAYEAFKQAQAKKVDVLIIDTAG 203 (321)
Q Consensus 177 dp~~v~~~a~~~a~~~~~DvvliDTAG 203 (321)
T Consensus 111 ~~~~ll~~l~~~v~~~~~~~vVIDSls 137 (241)
T PRK06067 111 LAEKLLDLIIEFIKRRREEVIIIDSLT 137 (241)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCHH
T ss_conf 689999999999997199899992801