HHsearch alignment for GI: 254780709 and conserved domain: PRK06067

>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=97.91  E-value=5.9e-05  Score=55.11  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH---------HHCC-CCCCCC---CCC
Q ss_conf             741231135444442478999999985226742677434512456889999975---------3035-321223---586
Q gi|254780709|r  110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---------RTSA-DFVCSE---IGS  176 (321)
Q Consensus       110 ~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~---------~~~v-~~~~~~---~~~  176 (321)
T Consensus        31 ~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L~i~~~~~~~~~~~~~  110 (241)
T PRK06067         31 FGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYLRIFPLNTEGFEWNSE  110 (241)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCHH
T ss_conf             99089998079988799999999999867982999994289999999999839985999866970578324111342155


Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             612454228999965148759986543
Q gi|254780709|r  177 DAAALAYEAFKQAQAKKVDVLIIDTAG  203 (321)
Q Consensus       177 dp~~v~~~a~~~a~~~~~DvvliDTAG  203 (321)
T Consensus       111 ~~~~ll~~l~~~v~~~~~~~vVIDSls  137 (241)
T PRK06067        111 LAEKLLDLIIEFIKRRREEVIIIDSLT  137 (241)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCHH
T ss_conf             689999999999997199899992801