HHsearch alignment for GI: 254780709 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00  E-value=0  Score=512.45  Aligned_cols=254  Identities=19%  Similarity=0.288  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             99999999999738898999999999998751278998999999999878520100121000136674123113544444
Q gi|254780709|r   44 GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG  123 (321)
Q Consensus        44 ~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~G  123 (321)
T Consensus        13 ~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~~~~vi~~l~~~l~~~~~~~~-----~~~~~~~vI~lvG~~G~G   87 (270)
T PRK06731         13 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTEN-----VFEKEVQTIALIGPTGVG   87 (270)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-----CCCCCCEEEEEECCCCCC
T ss_conf             999999999997699889999999999988504553299999999999987507665-----467998189998889898


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             24789999999852267426774345124568899999753035321223586612454228999965148759986543
Q gi|254780709|r  124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG  203 (321)
Q Consensus       124 KTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAG  203 (321)
T Consensus        88 KTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~---~~~~~~~~~~~~~~~~~~DvilIDTAG  164 (270)
T PRK06731         88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAG  164 (270)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCC---CHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             89999999999986799089998388888899999999998199535458---878999999999997699999997999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             3321157789999899876302223430112310233-522577899987643589769996545787069999999997
Q gi|254780709|r  204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH  282 (321)
Q Consensus       204 R~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~-~gq~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~  282 (321)
T Consensus       165 R~~~d~~lm~el~~~~~~~~------p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~als~~~~~  237 (270)
T PRK06731        165 KNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVS  237 (270)
T ss_pred             CCCCCHHHHHHHHHHHCCCC------CCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             87146999999999860638------98799998687776999999998077-999889996535899772999999998


Q ss_pred             CCCEEEEECCCCC-CCCCCCCHHHHHHHHCC
Q ss_conf             6988999758981-32555778999998728
Q gi|254780709|r  283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG  312 (321)
Q Consensus       283 ~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG  312 (321)
T Consensus       238 ~~PI~fig~Ge~VpeDi~~~~~~~la~riL~  268 (270)
T PRK06731        238 SAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ  268 (270)
T ss_pred             CCCEEEEECCCCCHHHHHCCCHHHHHHHHHH
T ss_conf             8597999459997021413799999999830