HHsearch alignment for GI: 254780709 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00 E-value=0 Score=408.50 Aligned_cols=286 Identities=23% Similarity=0.281 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 14899999999999999999999860567-78999999999999973889899999999999875127899899999999
Q gi|254780709|r 11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89 (321)
Q Consensus 11 m~~f~kLk~gL~kt~~~L~~~l~~l~~~~-~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~ 89 (321)
T Consensus 82 ~~~~~~l~~El~~lr~~l~~ql~~~~~~~~~~~~p~~~~l~~~L~~~g~~~~la~~l~~~l~~-----~~~~~~~~~~~~ 156 (404)
T PRK06995 82 DIVNATVMQELGSMRGMLEEQLAGLAWGDRQRRDPVRGALFRHLLAAGFSAQLVRMLLENLPA-----GDDAQAAMDWAR 156 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-----CCCHHHHHHHHH
T ss_conf 055899999999999999999998641264425807999999999879999999999984703-----389789999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCC-CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98785201001210001366741231135444442478999999985-2267-426774345124568899999753035
Q gi|254780709|r 90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSA 167 (321)
Q Consensus 90 ~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v 167 (321)
T Consensus 157 ~~l~~~l~~~~~~~--~~~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~Ilgv 234 (404)
T PRK06995 157 SVLASNLPVLGSED--ALMERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 234 (404)
T ss_pred HHHHHHCCCCCCCC--CHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99997466666653--1011475589866888763758999999999983898379997687547899999999987595
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHH
Q ss_conf 3212235866124542289999651487599865433321157789999899876302223430112310233522-577
Q gi|254780709|r 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NAL 246 (321)
Q Consensus 168 ~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~ 246 (321)
T Consensus 235 Pv~vv~~~~---e-L~~aL~~--l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~------~~~~~~~LVLsat~~~~dl~ 302 (404)
T PRK06995 235 PVHAVKDAA---D-LRLALAE--LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGA------GAPVQRLLLLNATSHGDTLN 302 (404)
T ss_pred EEEEECCHH---H-HHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHC------CCCCEEEEEECCCCCHHHHH
T ss_conf 599959999---9-9999997--0899999980999897688899999999735------78852899977989999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCC
Q ss_conf 8999876435897699965457870699999999976988999758981-325557789999987286564
Q gi|254780709|r 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316 (321)
Q Consensus 247 ~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~ 316 (321)
T Consensus 303 ~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~~ 372 (404)
T PRK06995 303 EVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPRE 372 (404)
T ss_pred HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 9999844-699983998304067972399999999789859981899584212108989999998626455