HHsearch alignment for GI: 254780709 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00  E-value=0  Score=408.50  Aligned_cols=286  Identities=23%  Similarity=0.281  Sum_probs=229.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             14899999999999999999999860567-78999999999999973889899999999999875127899899999999
Q gi|254780709|r   11 LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS   89 (321)
Q Consensus        11 m~~f~kLk~gL~kt~~~L~~~l~~l~~~~-~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~   89 (321)
T Consensus        82 ~~~~~~l~~El~~lr~~l~~ql~~~~~~~~~~~~p~~~~l~~~L~~~g~~~~la~~l~~~l~~-----~~~~~~~~~~~~  156 (404)
T PRK06995         82 DIVNATVMQELGSMRGMLEEQLAGLAWGDRQRRDPVRGALFRHLLAAGFSAQLVRMLLENLPA-----GDDAQAAMDWAR  156 (404)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-----CCCHHHHHHHHH
T ss_conf             055899999999999999999998641264425807999999999879999999999984703-----389789999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCCC-CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             98785201001210001366741231135444442478999999985-2267-426774345124568899999753035
Q gi|254780709|r   90 ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSA  167 (321)
Q Consensus        90 ~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g~-kV~lva~DtfR~aA~eQL~~~a~~~~v  167 (321)
T Consensus       157 ~~l~~~l~~~~~~~--~~~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~Ilgv  234 (404)
T PRK06995        157 SVLASNLPVLGSED--ALMERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV  234 (404)
T ss_pred             HHHHHHCCCCCCCC--CHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99997466666653--1011475589866888763758999999999983898379997687547899999999987595


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHH
Q ss_conf             3212235866124542289999651487599865433321157789999899876302223430112310233522-577
Q gi|254780709|r  168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NAL  246 (321)
Q Consensus       168 ~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~  246 (321)
T Consensus       235 Pv~vv~~~~---e-L~~aL~~--l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~------~~~~~~~LVLsat~~~~dl~  302 (404)
T PRK06995        235 PVHAVKDAA---D-LRLALAE--LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGA------GAPVQRLLLLNATSHGDTLN  302 (404)
T ss_pred             EEEEECCHH---H-HHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHHHHC------CCCCEEEEEECCCCCHHHHH
T ss_conf             599959999---9-9999997--0899999980999897688899999999735------78852899977989999999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHHCCCCCC
Q ss_conf             8999876435897699965457870699999999976988999758981-325557789999987286564
Q gi|254780709|r  247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY  316 (321)
Q Consensus       247 ~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG~gd~  316 (321)
T Consensus       303 ~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~~  372 (404)
T PRK06995        303 EVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPRE  372 (404)
T ss_pred             HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf             9999844-699983998304067972399999999789859981899584212108989999998626455