HHsearch alignment for GI: 254780709 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=97.11 E-value=0.0034 Score=42.76 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--ECC-CCCH----HHHHHHHHHHHHHCCCCCCCCC---CC-
Q ss_conf 66741231135444442478999999985226742677--434-5124----5688999997530353212235---86-
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA--AGD-TFRS----AAIDQLKIWADRTSADFVCSEI---GS- 176 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lv--a~D-tfR~----aA~eQL~~~a~~~~v~~~~~~~---~~- 176 (321)
T Consensus 36 grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~-~hpdl~~i~r~~d~k~~~ 114 (363)
T PRK07471 36 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAG-AHGGLLTLERSWNEKGKR 114 (363)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCC-CCCCEEEEECCCCCCCCC
T ss_conf 9976458767999818899999999998579997777767870531258777289999526-999846676200113332
Q ss_pred ----CCHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf ----61245422899996----5148759986543332115778999989987630222343011231023352257789
Q gi|254780709|r 177 ----DAAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248 (321)
Q Consensus 177 ----dp~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~ 248 (321)
T Consensus 115 ~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~a--aNALLK-------~LEEPP~~t~fiLit~~~~~llpT 185 (363)
T PRK07471 115 LRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANA--ANALLK-------VLEEPPARSLLLLVSHAPARLLPT 185 (363)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHH--HHHHHH-------HHCCCCCCEEEEEEECCHHHCHHH
T ss_conf 12445399999999997248524896699986878738899--999999-------721589883899863997777799
Q ss_pred HHH
Q ss_conf 998
Q gi|254780709|r 249 VEM 251 (321)
Q Consensus 249 a~~ 251 (321)
T Consensus 186 I~S 188 (363)
T PRK07471 186 IRS 188 (363)
T ss_pred HHH
T ss_conf 997