HHsearch alignment for GI: 254780709 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.57 E-value=0.00079 Score=47.17 Aligned_cols=152 Identities=11% Similarity=0.192 Sum_probs=86.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HH-HHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99999999973889899999999999875127899899999----99-99878520100121000136674123113544
Q gi|254780709|r 46 REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 (321)
Q Consensus 46 leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l-~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n 120 (321)
T Consensus 42 ~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fDf~~~p~i~~~~i~~L~~-~~~--fi---~~~~Nvil~Gp~ 115 (269)
T PRK08181 42 AARFLAAIAEHEIAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMISKAQVMALAA-GDS--WL---AKGANLLLFGPP 115 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC-CCH--HH---HCCCEEEEECCC
T ss_conf 999999999999999999999999986897998886547855689989999999965-675--88---648708998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
T Consensus 116 GtGKThLA~Alg~~A~~~G~~V~f~~~~~L----~~~L~~a----------~~~~~-----~~~~~~--~l~~~dLLIiD 174 (269)
T PRK08181 116 GGGKSHLAAAIGLALIENGWRVLFTRTTDL----VQKLQVA----------RRELQ-----LESAIA--KLDKFDLLILD 174 (269)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHH----------HHCCC-----HHHHHH--HHHCCCEEEEH
T ss_conf 987889999999999987993999789999----9999997----------75583-----999999--97444601220
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 543332115778999989987630222
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~ 227 (321)
T Consensus 175 e~G~~~~~~~~~~---~lf~lI~~Rye 198 (269)
T PRK08181 175 DLAYVTKDQAETS---VLFELISARYE 198 (269)
T ss_pred HCCCCCCCHHHHH---HHHHHHHHHHC
T ss_conf 1056679989999---99999999857