HHsearch alignment for GI: 254780709 and conserved domain: PRK09111

>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.13  E-value=0.0035  Score=42.63  Aligned_cols=119  Identities=22%  Similarity=0.288  Sum_probs=59.2

Q ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHC---CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCHH
Q ss_conf             674123113544444247899999998522---67-4267743451245688999997530353212----235866124
Q gi|254780709|r  109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA---GL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVC----SEIGSDAAA  180 (321)
Q Consensus       109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~---g~-kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~----~~~~~dp~~  180 (321)
T Consensus        43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r  117 (600)
T PRK09111         43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR  117 (600)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf             842047645789878999999999996698876668998898998-----865898866899875885155457888999


Q ss_pred             HHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf             54228999965-148759986543332115778999989987630222343011231023352
Q gi|254780709|r  181 LAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG  242 (321)
Q Consensus       181 v~~~a~~~a~~-~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g  242 (321)
T Consensus       118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--f-------nallktleepp~~~~fi~-att~  170 (600)
T PRK09111        118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--F-------NALLKTLEEPPPHVKFIF-ATTE  170 (600)
T ss_pred             HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--H-------HHHHHHHHCCCCCEEEEE-ECCC
T ss_conf             999860538877754699960011057999--9-------999987625986549999-6285