HHsearch alignment for GI: 254780709 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.13 E-value=0.0035 Score=42.63 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=59.2
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHC---CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCHH
Q ss_conf 674123113544444247899999998522---67-4267743451245688999997530353212----235866124
Q gi|254780709|r 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA---GL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVC----SEIGSDAAA 180 (321)
Q Consensus 109 ~~p~vil~vG~nG~GKTTT~aKLA~~~~~~---g~-kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~----~~~~~dp~~ 180 (321)
T Consensus 43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r 117 (600)
T PRK09111 43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR 117 (600)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 842047645789878999999999996698876668998898998-----865898866899875885155457888999
Q ss_pred HHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 54228999965-148759986543332115778999989987630222343011231023352
Q gi|254780709|r 181 LAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242 (321)
Q Consensus 181 v~~~a~~~a~~-~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~g 242 (321)
T Consensus 118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--f-------nallktleepp~~~~fi~-att~ 170 (600)
T PRK09111 118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--F-------NALLKTLEEPPPHVKFIF-ATTE 170 (600)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--H-------HHHHHHHHCCCCCEEEEE-ECCC
T ss_conf 999860538877754699960011057999--9-------999987625986549999-6285