HHsearch alignment for GI: 254780709 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.27  E-value=0.0017  Score=44.76  Aligned_cols=132  Identities=18%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---CCCCCC---
Q ss_conf             667412311354444424789999999852267----4267743451245688999997530353212---235866---
Q gi|254780709|r  108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSD---  177 (321)
Q Consensus       108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~----kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---~~~~~d---  177 (321)
T Consensus        42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~-~r~i~~g-~hpdl~~i~r~~d~k~~~~~~  119 (352)
T PRK09112         42 GRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPL-WRQIAQG-AHPNLLHLTRPFDEKTGKFKT  119 (352)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHCC-CCCCEEEEECCCCHHHHHHHC
T ss_conf             99652465358998089999999999986699866686556788878778-9999748-999956553432202145433


Q ss_pred             --CHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             --1245422899996----514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r  178 --AAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE  250 (321)
Q Consensus       178 --p~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~  250 (321)
T Consensus       120 ~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aa--NALLK~-------LEEPp~~~~fiLit~~~~~ll~TI~  189 (352)
T PRK09112        120 AITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAA--NAILKT-------LEEPPARALFILISHSSGRLLPTIR  189 (352)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH--HHHHHH-------HHCCCCCEEEEEEECCHHHCHHHHH
T ss_conf             577799999999845488668806999818787469999--999998-------5348987489988699777768999