HHsearch alignment for GI: 254780709 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.27 E-value=0.0017 Score=44.76 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCC---CCCCCC---
Q ss_conf 667412311354444424789999999852267----4267743451245688999997530353212---235866---
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSD--- 177 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~----kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~---~~~~~d--- 177 (321)
T Consensus 42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~-~r~i~~g-~hpdl~~i~r~~d~k~~~~~~ 119 (352)
T PRK09112 42 GRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPL-WRQIAQG-AHPNLLHLTRPFDEKTGKFKT 119 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHCC-CCCCEEEEECCCCHHHHHHHC
T ss_conf 99652465358998089999999999986699866686556788878778-9999748-999956553432202145433
Q ss_pred --CHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf --1245422899996----514875998654333211577899998998763022234301123102335225778999
Q gi|254780709|r 178 --AAALAYEAFKQAQ----AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250 (321)
Q Consensus 178 --p~~v~~~a~~~a~----~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~ 250 (321)
T Consensus 120 ~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aa--NALLK~-------LEEPp~~~~fiLit~~~~~ll~TI~ 189 (352)
T PRK09112 120 AITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAA--NAILKT-------LEEPPARALFILISHSSGRLLPTIR 189 (352)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHH--HHHHHH-------HHCCCCCEEEEEEECCHHHCHHHHH
T ss_conf 577799999999845488668806999818787469999--999998-------5348987489988699777768999