HHsearch alignment for GI: 254780709 and conserved domain: PRK09165
>PRK09165 replicative DNA helicase; Provisional.
Probab=95.34 E-value=0.29 Score=29.23 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHHHH---------------HCCCCEEEEE--------------------CCCCCHHH-
Q ss_conf 41231135444442478999999985---------------2267426774--------------------34512456-
Q gi|254780709|r 111 PHVILVVGVNGVGKTTVIGKLSKKMS---------------DAGLKVMLAA--------------------GDTFRSAA- 154 (321)
Q Consensus 111 p~vil~vG~nG~GKTTT~aKLA~~~~---------------~~g~kV~lva--------------------~DtfR~aA- 154 (321)
T Consensus 205 GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ir~g~l 284 (484)
T PRK09165 205 SDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKI 284 (484)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 73799960799977899999999999874102222332113689848999477999999999999972686135544899
Q ss_pred ----HHHHHHHHHH-HCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHH
Q ss_conf ----8899999753-0353212235-866124542289999651487599865433321-----1577899998998763
Q gi|254780709|r 155 ----IDQLKIWADR-TSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-----NSILMAGIGKMIRVLK 223 (321)
Q Consensus 155 ----~eQL~~~a~~-~~v~~~~~~~-~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~-----~~~lm~EL~ki~~v~~ 223 (321)
T Consensus 285 ~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi~~~~~~~~~~R~~ev~~Isr~LK 364 (484)
T PRK09165 285 SEEDFEKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLIRGSSKRSQDNRVQEISEITQGLK 364 (484)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999971984897799987999999999999860998899951763578888861219999999999999
Q ss_pred CCCC
Q ss_conf 0222
Q gi|254780709|r 224 RLDP 227 (321)
Q Consensus 224 ~~~~ 227 (321)
T Consensus 365 ~lAk 368 (484)
T PRK09165 365 ALAK 368 (484)
T ss_pred HHHH
T ss_conf 9999