HHsearch alignment for GI: 254780709 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.81 E-value=0.00029 Score=50.21 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 999999999973889899999999999875127899899999----9999878520100121000136674123113544
Q gi|254780709|r 45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120 (321)
Q Consensus 45 ~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n 120 (321)
T Consensus 37 s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp~~ktle~fDf~~~~~l~~~~i~~La~----~~f--i~~~~Nvil~G~~ 110 (258)
T PRK09183 37 SYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRS----LSF--IERNENIVLLGPS 110 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC----CCH--HHCCCCEEEECCC
T ss_conf 9999999999999999999999999997799998777555654688623899998825----816--6558867998999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200 (321)
Q Consensus 121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD 200 (321)
T Consensus 111 GtGKThLA~Alg~~A~~~G~~v~f~~~~~----L~~~L~~a~----------~~~~-----~~~~l~r-~l~~~dLLIiD 170 (258)
T PRK09183 111 GVGKTHLAIALGYEAVRAGIKVRFTTAAD----LLLQLSTAQ----------RQGR-----YKTTLQR-GVMAPRLLIID 170 (258)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEHHH----HHHHHHHHH----------HCCC-----HHHHHHH-HHCCCCEEEEH
T ss_conf 98689999999999998799399978999----999999998----------7685-----9999998-74346514431
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 543332115778999989987630222
Q gi|254780709|r 201 TAGRLHNNSILMAGIGKMIRVLKRLDP 227 (321)
Q Consensus 201 TAGR~~~~~~lm~EL~ki~~v~~~~~~ 227 (321)
T Consensus 171 dlG~~~~~~~~~~---~lfeli~~Rye 194 (258)
T PRK09183 171 EIGYLPFSQEEAN---LFFQVIAKRYE 194 (258)
T ss_pred HHHCCCCCHHHHH---HHHHHHHHHHC
T ss_conf 3315468888999---99999999857