HHsearch alignment for GI: 254780709 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=97.81  E-value=0.00029  Score=50.21  Aligned_cols=154  Identities=17%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             999999999973889899999999999875127899899999----9999878520100121000136674123113544
Q gi|254780709|r   45 VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN  120 (321)
Q Consensus        45 ~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~----~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~n  120 (321)
T Consensus        37 s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp~~ktle~fDf~~~~~l~~~~i~~La~----~~f--i~~~~Nvil~G~~  110 (258)
T PRK09183         37 SYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRS----LSF--IERNENIVLLGPS  110 (258)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHC----CCH--HHCCCCEEEECCC
T ss_conf             9999999999999999999999999997799998777555654688623899998825----816--6558867998999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             44424789999999852267426774345124568899999753035321223586612454228999965148759986
Q gi|254780709|r  121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID  200 (321)
Q Consensus       121 G~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~~~~DvvliD  200 (321)
T Consensus       111 GtGKThLA~Alg~~A~~~G~~v~f~~~~~----L~~~L~~a~----------~~~~-----~~~~l~r-~l~~~dLLIiD  170 (258)
T PRK09183        111 GVGKTHLAIALGYEAVRAGIKVRFTTAAD----LLLQLSTAQ----------RQGR-----YKTTLQR-GVMAPRLLIID  170 (258)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEEHHH----HHHHHHHHH----------HCCC-----HHHHHHH-HHCCCCEEEEH
T ss_conf             98689999999999998799399978999----999999998----------7685-----9999998-74346514431


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             543332115778999989987630222
Q gi|254780709|r  201 TAGRLHNNSILMAGIGKMIRVLKRLDP  227 (321)
Q Consensus       201 TAGR~~~~~~lm~EL~ki~~v~~~~~~  227 (321)
T Consensus       171 dlG~~~~~~~~~~---~lfeli~~Rye  194 (258)
T PRK09183        171 EIGYLPFSQEEAN---LFFQVIAKRYE  194 (258)
T ss_pred             HHHCCCCCHHHHH---HHHHHHHHHHC
T ss_conf             3315468888999---99999999857