HHsearch alignment for GI: 254780709 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=98.68 E-value=2.1e-06 Score=65.20 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=109.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHH----HHHHHHHHHHCCCCCCCCCCCC---
Q ss_conf 667412311354444424789999999852267426774345124---568----8999997530353212235866---
Q gi|254780709|r 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI----DQLKIWADRTSADFVCSEIGSD--- 177 (321)
Q Consensus 108 ~~~p~vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~---aA~----eQL~~~a~~~~v~~~~~~~~~d--- 177 (321)
T Consensus 46 ~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg 125 (325)
T PRK09435 46 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 125 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 79825997427999868899999999999679858999978999988861010388887614799848840677888677
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-C
Q ss_conf 124542289999651487599865433321157789999899876302223430112310233522577899987643-5
Q gi|254780709|r 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-A 256 (321)
Q Consensus 178 p~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~-~ 256 (321)
T Consensus 126 ~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v~-------~~--------~d~~~~~~~p~~G-D~~Q---~~K~GIm 186 (325)
T PRK09435 126 VARKTRETMLLCEAAGFDVILVETVGVGQSETAVA-------GM--------VDFFLLLQLPGAG-DELQ---GIKKGIM 186 (325)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-------HH--------CCEEEEEECCCCC-CHHH---HHHHHHH
T ss_conf 33549999999997799989997067771488998-------74--------2668888358876-0889---9886577
Q ss_pred C-CCEEEEECCCCCCCHHHHHHHHHH-------------HCCCEEEEEC--CCCCCCCC
Q ss_conf 8-976999654578706999999999-------------7698899975--89813255
Q gi|254780709|r 257 G-TTGLIMTKMDGTARGGGLIPIVVT-------------HKIPVYFLGV--GEGINDLE 299 (321)
Q Consensus 257 ~-~~g~I~TKlD~ta~~G~~ls~~~~-------------~~~Pi~fig~--Ge~i~Dl~ 299 (321)
T Consensus 187 EiaDi~vVNKaDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~ 245 (325)
T PRK09435 187 ELADLIVINKADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELW 245 (325)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 50426899776755658999999999999860788789999998999815899879999