HHsearch alignment for GI: 254780709 and conserved domain: PRK11448

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=97.28  E-value=0.00027  Score=50.46  Aligned_cols=135  Identities=24%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE---------ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             1231135444442478999999985226--742677---------43451245688999997530353212235866124
Q gi|254780709|r  112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLA---------AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA  180 (321)
Q Consensus       112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lv---------a~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~  180 (321)
T Consensus       437 rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~~~~~~~~r  516 (1126)
T PRK11448        437 REILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQTFASIYDIKGLTDKFPEDETK  516 (1126)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCE
T ss_conf             54688724888589899999999996587672579856589999999987543454566640022001025678787771


Q ss_pred             HHHHHHHHHH-------------HHCCCEEEEECCCCCCCHHHHHH-----------HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             5422899996-------------51487599865433321157789-----------99989987630222343011231
Q gi|254780709|r  181 LAYEAFKQAQ-------------AKKVDVLIIDTAGRLHNNSILMA-----------GIGKMIRVLKRLDPHAPHSVLQV  236 (321)
Q Consensus       181 v~~~a~~~a~-------------~~~~DvvliDTAGR~~~~~~lm~-----------EL~ki~~v~~~~~~~~p~~~~lV  236 (321)
T Consensus       517 v~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~skyr~IldYFDA-----~~iG  591 (1126)
T PRK11448        517 VHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVSKYRRVLDYFDA-----VKIG  591 (1126)
T ss_pred             EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH-----HHHC
T ss_conf             99973078998752357677999985137989778788743323110001023202477789999876215-----5404


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             023352257789998764
Q gi|254780709|r  237 LDATTGQNALRQVEMFHA  254 (321)
Q Consensus       237 lda~~gq~~~~~a~~F~~  254 (321)
T Consensus       592 LTATP---~~~T~~~Fg~  606 (1126)
T PRK11448        592 LTATP---ALHTTEIFGE  606 (1126)
T ss_pred             CCCCC---CCCHHHHHCC
T ss_conf             76799---9555677099