HHsearch alignment for GI: 254780709 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=97.28 E-value=0.00027 Score=50.46 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=72.9
Q ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE---------ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 1231135444442478999999985226--742677---------43451245688999997530353212235866124
Q gi|254780709|r 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLA---------AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180 (321)
Q Consensus 112 ~vil~vG~nG~GKTTT~aKLA~~~~~~g--~kV~lv---------a~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 180 (321)
T Consensus 437 rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~~~~~~~~r 516 (1126)
T PRK11448 437 REILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGNQTFASIYDIKGLTDKFPEDETK 516 (1126)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCE
T ss_conf 54688724888589899999999996587672579856589999999987543454566640022001025678787771
Q ss_pred HHHHHHHHHH-------------HHCCCEEEEECCCCCCCHHHHHH-----------HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 5422899996-------------51487599865433321157789-----------99989987630222343011231
Q gi|254780709|r 181 LAYEAFKQAQ-------------AKKVDVLIIDTAGRLHNNSILMA-----------GIGKMIRVLKRLDPHAPHSVLQV 236 (321)
Q Consensus 181 v~~~a~~~a~-------------~~~~DvvliDTAGR~~~~~~lm~-----------EL~ki~~v~~~~~~~~p~~~~lV 236 (321)
T Consensus 517 v~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~skyr~IldYFDA-----~~iG 591 (1126)
T PRK11448 517 VHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVSKYRRVLDYFDA-----VKIG 591 (1126)
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH-----HHHC
T ss_conf 99973078998752357677999985137989778788743323110001023202477789999876215-----5404
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 023352257789998764
Q gi|254780709|r 237 LDATTGQNALRQVEMFHA 254 (321)
Q Consensus 237 lda~~gq~~~~~a~~F~~ 254 (321)
T Consensus 592 LTATP---~~~T~~~Fg~ 606 (1126)
T PRK11448 592 LTATP---ALHTTEIFGE 606 (1126)
T ss_pred CCCCC---CCCHHHHHCC
T ss_conf 76799---9555677099