HHsearch alignment for GI: 254780709 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=97.71 E-value=0.00047 Score=48.77 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=76.8
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-----CCCCCC---CCC--HHHH
Q ss_conf 231135444442478999999985226742677434512456889999975303532-----122358---661--2454
Q gi|254780709|r 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-----VCSEIG---SDA--AALA 182 (321)
Q Consensus 113 vil~vG~nG~GKTTT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~-----~~~~~~---~dp--~~v~ 182 (321)
T Consensus 22 ~~vl~a~tGsGKtTqvP~~--ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~~ 99 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLPLQ--LLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVV 99 (812)
T ss_pred EEEEEECCCCCHHHHHHHH--HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 7999908999989999999--99646889938993883999999999999972999998675782567788998579997
Q ss_pred HHHHHH------HHHHCCCEEEEECCCCCCCHHHH-HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 228999------96514875998654333211577-89999899876302223430112310233522577899987643
Q gi|254780709|r 183 YEAFKQ------AQAKKVDVLIIDTAGRLHNNSIL-MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255 (321)
Q Consensus 183 ~~a~~~------a~~~~~DvvliDTAGR~~~~~~l-m~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq~~~~~a~~F~~~ 255 (321)
T Consensus 100 T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~------r~dLklvvMSATl--d~----~~~~~~ 167 (812)
T PRK11664 100 TEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGL------RDDLKLLIMSATL--DN----DRLQQL 167 (812)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH------CCCCEEEEECCCC--CH----HHHHHH
T ss_conf 55899999724977677888999575468751899999999999861------8982899984788--84----889975
Q ss_pred CC
Q ss_conf 58
Q gi|254780709|r 256 AG 257 (321)
Q Consensus 256 ~~ 257 (321)
T Consensus 168 ~~ 169 (812)
T PRK11664 168 LP 169 (812)
T ss_pred CC
T ss_conf 89