HHsearch alignment for GI: 254780709 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=389.99 Aligned_cols=250 Identities=20% Similarity=0.298 Sum_probs=197.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHH
Q ss_conf 99999999738898999999999998751278-99899999999987852010012100013667412311354444424
Q gi|254780709|r 47 EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 (321)
Q Consensus 47 eeLee~LL~ADVg~~va~~Iie~ik~~~~~~~-i~~~~i~~~l~~~L~~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKT 125 (321)
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~q~IALVGPTGVGKT 255 (436)
T PRK11889 181 QKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFN----TENV-FEKEVQTIALIGPTGVGKT 255 (436)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC----HHHH-HHHHCEEEEEECCCCCCHH
T ss_conf 9999998855525899999999863112134110299999999999887403----1013-3641717999899998889
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCEEEEECCCC
Q ss_conf 789999999852267426774345124568899999753035321223586612454228999965-1487599865433
Q gi|254780709|r 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGR 204 (321)
Q Consensus 126 TT~aKLA~~~~~~g~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~~~~~~dp~~v~~~a~~~a~~-~~~DvvliDTAGR 204 (321)
T Consensus 256 TTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~d---p~eL-~~AL~~lkdka~~DLILIDTAGR 331 (436)
T PRK11889 256 TTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---EAAM-TRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC---HHHH-HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9999999998616980899980663476999999999984994399688---8999-99999876336888899929898
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 321157789999899876302223430112310233522-5778999876435897699965457870699999999976
Q gi|254780709|r 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283 (321)
Q Consensus 205 ~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~ 283 (321)
T Consensus 332 S~RD~~~I~EL~~~l~~~~------p~ev~LVLSATTK~~DL~eIi~rF~-~l~idglIfTKLDET~SlG~ILNv~~~s~ 404 (436)
T PRK11889 332 NYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSS 404 (436)
T ss_pred CCCCHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 8468999999999985127------7716999978899899999999725-79988289971325687037888998839
Q ss_pred CCEEEEECCCCC-CCCCCCCHHHHHHHHCC
Q ss_conf 988999758981-32555778999998728
Q gi|254780709|r 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312 (321)
Q Consensus 284 ~Pi~fig~Ge~i-~Dl~~f~~~~~~~~llG 312 (321)
T Consensus 405 LPIsYvTdGQ~VPEDIevA~ae~LAk~mLe 434 (436)
T PRK11889 405 APIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 987997899858753000699999999843