HHsearch alignment for GI: 254780709 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=369.26 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999999860567789999999999999738898999999999998751278998999999999878
Q gi|254780709|r 14 IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93 (321)
Q Consensus 14 f~kLk~gL~kt~~~L~~~l~~l~~~~~lde~~leeLee~LL~ADVg~~va~~Iie~ik~~~~~~~i~~~~i~~~l~~~L~ 93 (321)
T Consensus 260 l~~mr~El~smR~llE~Ql~~L~~e~~r~~P~ra~L~krL~~~GfS~~Lar~L~~~lP-----~~~~~~~a~~~ll~~La 334 (557)
T PRK12727 260 LKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIP-----ADTELHRGRGLMLGLLS 334 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999999998887772393889999999976699999999997483-----32788899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH-HCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5201001210001366741231135444442478999999985-226-74267743451245688999997530353212
Q gi|254780709|r 94 KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171 (321)
Q Consensus 94 ~~L~~~~~~~~~~~~~~p~vil~vG~nG~GKTTT~aKLA~~~~-~~g-~kV~lva~DtfR~aA~eQL~~~a~~~~v~~~~ 171 (321)
T Consensus 335 ~~Lpv~~~d~-~---~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~ 410 (557)
T PRK12727 335 KRLPVAPVDP-L---ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE 410 (557)
T ss_pred HHCCCCCCCH-H---HCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 6287777751-5---40764787437776731179999999999739981899972664087999999999983975798
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH-HHHHHHH
Q ss_conf 235866124542289999651487599865433321157789999899876302223430112310233522-5778999
Q gi|254780709|r 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALRQVE 250 (321)
Q Consensus 172 ~~~~~dp~~v~~~a~~~a~~~~~DvvliDTAGR~~~~~~lm~EL~ki~~v~~~~~~~~p~~~~lVlda~~gq-~~~~~a~ 250 (321)
T Consensus 411 ~~~~~~---l-~~~l~--~l~~~~lvliDTaG~~~rd~~~~~~~~~l~~-------~~~~~~~Lvl~a~~~~~~l~~~~~ 477 (557)
T PRK12727 411 ADSAES---L-LDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNWLRA-------ARQVTSLLVLPANAHFSDLDEVVR 477 (557)
T ss_pred ECCHHH---H-HHHHH--HHCCCCEEEEECCCCCCCCHHHHHHHHHHHC-------CCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 289999---9-99999--8369998999499988469999999998751-------477635999968899899999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCHHHHHHHH
Q ss_conf 876435897699965457870699999999976988999758981-325557789999987
Q gi|254780709|r 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVI 310 (321)
Q Consensus 251 ~F~~~~~~~g~I~TKlD~ta~~G~~ls~~~~~~~Pi~fig~Ge~i-~Dl~~f~~~~~~~~l 310 (321)
T Consensus 478 ~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a~~~~Lv~Ra 537 (557)
T PRK12727 478 RFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRL 537 (557)
T ss_pred HHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHH
T ss_conf 853-799874899614367870399999999689828975898285236438999999999